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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCATGCAACCAGTTTCTGAAACAAGAGCCCGGGAGTAGCCAGGAGGCAGAGGAATTTGCCTGTACAAGGTACAAGGCTGAGTATCCCATTTTTGGAAAGgtaaggtattggttgtttgtactttgtataggcatctggatcctctactgattgtttttccgttctagatattttagggtacaaagataatagtaaactg...

Basic information

species Glycine max
transcript GLYMA19G33650.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G33650.3 (Glycine max), 5'ss of exon 4
lower sequence: Vv07s0104g00320.t01 (Vitis vinifera), 5'ss of exon 4
TCCATGCAACCAGTTTCTGAAACAAGAGCCCGGGAGTAGCCAGGAGGCAGAGGAATTTGCCTGTACAAGGTACAAGGCTGAGTATCCCATTTTTGGAAAGgtaag-gtattggttgtttgtac-tttgtataggcatctggatcctctactgattgtttttccg-ttctag-atattttagggtacaaagataatagtaaactg
||||||||| || |||||||| |||||||| |||   ||  || ||||| | |||||||| |||||||| ||||||||||| ||||| ||||||   |||||||  | |    || ||||||  ||| ||     || |  |   || |     ||||||   | |||||  | | |||    | | |   |     | |    
TCCATGCAATCAATTTCTGAAGCAAGAGCCTGGGTCGAGTGAGCAGGCACAAGAATTTGCATGTACAAGATACAAGGCTGAATATCCAATTTTTCATAAGgtaaaagaaactattatttgtatatttatagccttatgtaaaatttcaatcatatgttttggtgcttctaacacagttttaatttctattttgtcgatta----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298171406|gb|HO016438.1|HO016438
EST:     AGGAATTTGCCTGTACAAGGTACAAGGCTGAGTATCCCATTTTTGGAAAG                         GTACGTGTCAATGGACCTGATACAGCACCTGTCTACAAATTCCTTAAAGCA
genomic: AGGAATTTGCCTGTACAAGGTACAAGGCTGAGTATCCCATTTTTGGAAAGgtaaggtatt ... ttatttacagGTACGTGTCAATGGACCTGATACAGCACCTGTCTACAAATTCCTTAAAGCA
EST: gi|9819421|gb|BE554934.1|BE554934
EST:     AGGAATTTGCCTGTACAAGGTACAAGGCTGAGTATCCCATTTTTGGAAAG                         GTACGTGTCAATGGACCTGATACAGCACCTGTCTACAAATTCCTTAAAGCA
genomic: AGGAATTTGCCTGTACAAGGTACAAGGCTGAGTATCCCATTTTTGGAAAGgtaaggtatt ... ttatttacagGTACGTGTCAATGGACCTGATACAGCACCTGTCTACAAATTCCTTAAAGCA
EST: gi|10709776|gb|BF009500.1|BF009500
EST:     AGGAATTTGCCTGTACAAGGTACAAGGCTGAGTATCCCATTTTTGGAAAG                         GTACGTGTCAATGGACCTGATACAGCACCTGTCTACAAATTCCTTAAAGCA
genomic: AGGAATTTGCCTGTACAAGGTACAAGGCTGAGTATCCCATTTTTGGAAAGgtaaggtatt ... ttatttacagGTACGTGTCAATGGACCTGATACAGCACCTGTCTACAAATTCCTTAAAGCA
EST: gi|13477752|gb|BG507504.1|BG507504
EST:     AGGAATTTGCCTGTACAAGGTACAAGGCTGAGTATCCCATTTTTGGAAAG                         GTACGTGTCAATGGACCTGATACAGCACCTGTCTACAAATTCCTTAAAGCA
genomic: AGGAATTTGCCTGTACAAGGTACAAGGCTGAGTATCCCATTTTTGGAAAGgtaaggtatt ... ttatttacagGTACGTGTCAATGGACCTGATACAGCACCTGTCTACAAATTCCTTAAAGCA
EST: gi|298166996|gb|HO010435.1|HO010435
EST:     AGGAATTTGCCTGTACAAGGTACAAGGCTGAGTATCCCATTTTTGGAAAG                         GTACGTGTCAATGGACCTGATACAGCACCTGTCTACAAATTCCTTAAAGCA
genomic: AGGAATTTGCCTGTACAAGGTACAAGGCTGAGTATCCCATTTTTGGAAAGgtaaggtatt ... ttatttacagGTACGTGTCAATGGACCTGATACAGCACCTGTCTACAAATTCCTTAAAGCA
EST: gi|15663056|gb|BI700427.1|BI700427
EST:     AGGAATTTGCCTGTACAAGGTACAAGGCTGAGTATCCCATTTTTGGAAAG                         GTACGTGTCAATGGACCTGATACAGCACCTGTCTACAAATTCCTTAAAGCA
genomic: AGGAATTTGCCTGTACAAGGTACAAGGCTGAGTATCCCATTTTTGGAAAGgtaaggtatt ... ttatttacagGTACGTGTCAATGGACCTGATACAGCACCTGTCTACAAATTCCTTAAAGCA
EST: gi|208048673|gb|GD846232.1|GD846232
EST:     AGGAATTTGCCTGTACAAGGTACAAGGCTGAGTATCCCATTTTTGGAAAG                         GTACGTGTCAATGGACCTGATACAGCACCTGTCTACAAATTCCTTAAAGCA
genomic: AGGAATTTGCCTGTACAAGGTACAAGGCTGAGTATCCCATTTTTGGAAAGgtaaggtatt ... ttatttacagGTACGTGTCAATGGACCTGATACAGCACCTGTCTACAAATTCCTTAAAGCA
EST: gi|9820763|gb|BE556273.1|BE556273
EST:     AGGAATTTGCCTGTACAAGGTACAAGGCTGAGTATCCCATTTTTGGAAAG                         GTACGTGTCAATGGACCTGATACAGCACCTGTCTACAAATTCCTTAAAGCA
genomic: AGGAATTTGCCTGTACAAGGTACAAGGCTGAGTATCCCATTTTTGGAAAGgtaaggtatt ... ttatttacagGTACGTGTCAATGGACCTGATACAGCACCTGTCTACAAATTCCTTAAAGCA
EST: gi|19453002|gb|BM954412.1|BM954412
EST:     AGGAATTTGCCTGTACAAGGTACAAGGCTGAGTATCCCATTTTTGGAAAG                         GTACGTGTCAATGGACCTGATACAGCACCTGTCTACAAATTCCTTAAAGCA
genomic: AGGAATTTGCCTGTACAAGGTACAAGGCTGAGTATCCCATTTTTGGAAAGgtaaggtatt ... ttatttacagGTACGTGTCAATGGACCTGATACAGCACCTGTCTACAAATTCCTTAAAGCA
EST: gi|208115002|gb|GD910359.1|GD910359
EST:     AGGAATTTGCCTGTACAAGGTACAAGGCTGAGTATCCCATTTTTGGAAAG                         GTACGTGTCAATGGACCTGATACAGCACCTGTCTACAAATTCCTTAAAGCA
genomic: AGGAATTTGCCTGTACAAGGTACAAGGCTGAGTATCCCATTTTTGGAAAGgtaaggtatt ... ttatttacagGTACGTGTCAATGGACCTGATACAGCACCTGTCTACAAATTCCTTAAAGCA
EST: gi|298187303|gb|HO034452.1|HO034452
EST:     AGGAATTTGCCTGTACAAGGTACAAGGCTGAGTATCCCATTTTTGGAAAG                         GTACGTGTCAATGGACCTGATACAGCACCTGTCTACAAATTCCTTAAAGCA
genomic: AGGAATTTGCCTGTACAAGGTACAAGGCTGAGTATCCCATTTTTGGAAAGgtaaggtatt ... ttatttacagGTACGTGTCAATGGACCTGATACAGCACCTGTCTACAAATTCCTTAAAGCA
EST: gi|298197094|gb|HO041837.1|HO041837
EST:     AGGAATTTGCCTGTACAAGGTACAAGGCTGAGTATCCCATTTTTGGAAAG                         GTACGTGTCAATGGACCTGATACAGCACCTGTCTACAAATTCCTTAAAGCA
genomic: AGGAATTTGCCTGTACAAGGTACAAGGCTGAGTATCCCATTTTTGGAAAGgtaaggtatt ... ttatttacagGTACGTGTCAATGGACCTGATACAGCACCTGTCTACAAATTCCTTAAAGCA
EST: gi|298173934|gb|HO017270.1|HO017270
EST:     AGGAATTTGCCTGTACAAGGTACAAGGCTGAGTATCCCATTTTTGGAAAG                         GTACGTGTCAATGGACCTGATACAGCACCTGTCTACAAATTCCTTAAAGCA
genomic: AGGAATTTGCCTGTACAAGGTACAAGGCTGAGTATCCCATTTTTGGAAAGgtaaggtatt ... ttatttacagGTACGTGTCAATGGACCTGATACAGCACCTGTCTACAAATTCCTTAAAGCA
EST: gi|298168059|gb|HO013322.1|HO013322
EST:     AGGAATTTGCCTGTACAAGGTACAAGGCTGAGTATCCCATTTTTGGAAAG                         GTACGTGTCAATGGACCTGATACAGCACCTGTCTACAAATTCCTTAAAGCA
genomic: AGGAATTTGCCTGTACAAGGTACAAGGCTGAGTATCCCATTTTTGGAAAGgtaaggtatt ... ttatttacagGTACGTGTCAATGGACCTGATACAGCACCTGTCTACAAATTCCTTAAAGCA
EST: gi|298194861|gb|HO043333.1|HO043333
EST:     AGGAATTTGCCTGTACAAGGTACAAGGCTGAGTATCCCATTTTTGGAAAG                         GTACGTGTCAATGGACCTGATACAGCACCTGTCTACAAATTCCTTAAAGCA
genomic: AGGAATTTGCCTGTACAAGGTACAAGGCTGAGTATCCCATTTTTGGAAAGgtaaggtatt ... ttatttacagGTACGTGTCAATGGACCTGATACAGCACCTGTCTACAAATTCCTTAAAGCA
EST: gi|298192806|gb|HO033240.1|HO033240
EST:     AGGAATTTGCCTATACAAGGTACAAGGCTGAGTATCCCATTTTTGGAAAG                         GTACGTGTCAATGGACCTGATACAGCACCTGTCTACAAATTCCTTAAAGCA
genomic: AGGAATTTGCCTGTACAAGGTACAAGGCTGAGTATCCCATTTTTGGAAAGgtaaggtatt ... ttatttacagGTACGTGTCAATGGACCTGATACAGCACCTGTCTACAAATTCCTTAAAGCA
EST: gi|298184031|gb|HO029244.1|HO029244
EST:     AGGAATTTGCCTGTACAAGGTACAAGGCTGAGTATCCCATTTTTGGAAAG                         GTACGTGTCAATGGACCTGATACAGCACCTGTCTACAAATTCCTTAAAGCA
genomic: AGGAATTTGCCTGTACAAGGTACAAGGCTGAGTATCCCATTTTTGGAAAGgtaaggtatt ... ttatttacagGTACGTGTCAATGGACCTGATACAGCACCTGTCTACAAATTCCTTAAAGCA
EST: gi|151397536|gb|EV267409.1|EV267409
EST:     AGGAATTTGCCTGTACAAGGTACAAGGCTGAGTATCCCATTTTTGGAAAG                         GTACGTGTCAATGGACCTGATACAGCACCTGTCTACAAATTCCTTAAAGCA
genomic: AGGAATTTGCCTGTACAAGGTACAAGGCTGAGTATCCCATTTTTGGAAAGgtaaggtatt ... ttatttacagGTACGTGTCAATGGACCTGATACAGCACCTGTCTACAAATTCCTTAAAGCA
EST: gi|192319134|gb|FK009102.1|FK009102
EST:     AGGAATTTGCCTGTACAAGGTACAAGGCTGAGTATCCCATTTTTGGAAAG                         GTACGTGTCAATGGACCTGATACAGCACCTGTCTACAAATTCCTTAAAGCA
genomic: AGGAATTTGCCTGTACAAGGTACAAGGCTGAGTATCCCATTTTTGGAAAGgtaaggtatt ... ttatttacagGTACGTGTCAATGGACCTGATACAGCACCTGTCTACAAATTCCTTAAAGCA
EST: gi|298166854|gb|HO010293.1|HO010293
EST:     AGGAATTTGCCTGTACAAGGTACAAGGCTGAGTATCCCATTTTTGGAAAG                         GTACGTGTCAATGGACCTGATACAGCACCTGTCTACAAATTCCTTAAAGCA
genomic: AGGAATTTGCCTGTACAAGGTACAAGGCTGAGTATCCCATTTTTGGAAAGgtaaggtatt ... ttatttacagGTACGTGTCAATGGACCTGATACAGCACCTGTCTACAAATTCCTTAAAGCA
EST: gi|193433477|gb|FK403997.1|FK403997
EST:     GGAATTTGCCTGTACAAGGTACAAGGCTGAGTATCCCATTTTTTGGAAAG                         GTACGTGTCAATGGACCTGATACAGCACCTGTCTACAAATTCCTTAAAGCA
genomic: GGAATTTGCCTGTACAAGGTACAAGGCTGAGTATCCCA-TTTTTGGAAAGgtaaggtatt ... ttatttacagGTACGTGTCAATGGACCTGATACAGCACCTGTCTACAAATTCCTTAAAGCA
EST: gi|298166545|gb|HO009984.1|HO009984
EST:     AGGAATTTGCCTGTACAAGGTACAAGGCTGAGTATCCCATTTTTGGAAAG                         GTACGTGTCAATGGACCTGATACAGCACCTGTCTACAAATTCCTTAAAGCA
genomic: AGGAATTTGCCTGTACAAGGTACAAGGCTGAGTATCCCATTTTTGGAAAGgtaaggtatt ... ttatttacagGTACGTGTCAATGGACCTGATACAGCACCTGTCTACAAATTCCTTAAAGCA
EST: gi|207711242|gb|GD693019.1|GD693019
EST:     AGGAATTTGCCTGTACAAGGTACAAGGCTGAGTATCCCATTTTTGGAAAG                         GTACGTGTCAATGGACCTGATACAGCACCTGTCTACAAATTCCTTAAA
genomic: AGGAATTTGCCTGTACAAGGTACAAGGCTGAGTATCCCATTTTTGGAAAGgtaaggtatt ... ttatttacagGTACGTGTCAATGGACCTGATACAGCACCTGTCTACAAATTCCTTAAA
EST: gi|298195273|gb|HO043801.1|HO043801
EST:     AGGAATTTGCCTGTACAAGGTACAAGGCTGAGTATCCCATTTTTGGAAAG                         GTACGTGTCAATGGACCTGATACAGCACCTGTCTACAAATTCCTTAAAGCA
genomic: AGGAATTTGCCTGTACAAGGTACAAGGCTGAGTATCCCATTTTTGGAAAGgtaaggtatt ... ttatttacagGTACGTGTCAATGGACCTGATACAGCACCTGTCTACAAATTCCTTAAAGCA
EST: gi|207802831|gb|GD776144.1|GD776144
EST:     AGGAATTTGCCTGTACAAGGTACAAGGCTGAGTATCCCATTTTTGGAAAG                         GTACGTGTCAATGGACCTGATACAGCACCTGTCTACAAATTCCTTAAAGCA
genomic: AGGAATTTGCCTGTACAAGGTACAAGGCTGAGTATCCCATTTTTGGAAAGgtaaggtatt ... ttatttacagGTACGTGTCAATGGACCTGATACAGCACCTGTCTACAAATTCCTTAAAGCA
EST: gi|298183535|gb|HO028748.1|HO028748
EST:     AGGAATTTGCCTGTACAAGGTACAAGGCTGAGTATCCCATTTTTGGAAAG                         GTACGTGTCAATGGACCCGATACAGCACCTGTCTACAAATTCCTTAAAGCA
genomic: AGGAATTTGCCTGTACAAGGTACAAGGCTGAGTATCCCATTTTTGGAAAGgtaaggtatt ... ttatttacagGTACGTGTCAATGGACCTGATACAGCACCTGTCTACAAATTCCTTAAAGCA