Sequence
atgc intronic sequence ATGC exonic sequenceGTAAAGAGCATGCACTTGTGATAAGCAATCACAGAAGTGATATTGATTGGCTTGTTGGATGGGTTTCAGCTCAGgtgattgtcttagttggtctgatattttccacatcttcaatgaaagcaaattagcacaaattcatttgtgtattaatacaagtaatttattttattcgta...
Basic information
species | Glycine max |
transcript | GLYMA19G32420.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G32420.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM5G878139_T02 (Zea mays), 5'ss of exon 2
GTAAAGAGCATGCACTTGTGATAAGCAATCACAGAAGTGATATTGATTGGCTTGTTGGATGGGTTTCAGCTCAGgtgat-tgtcttagttggtctgatattttccacatcttcaatgaaagcaaatta----gcacaaattcatttgtgtattaatacaagtaatttattttattcgta-------------------
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GTAAAGAGCATGCACTCGTCATATCAAATCATCGAAGTGATATTGATTGGCTTATTGGATGGATATTGGCCCAGgttatctcccatcttctgtatagt-tgttagagatttactttgctcacagttcatactgtttagatttatttgtattagctgataaataatatgagactcttgttttctggtccatgtgttcag
upper sequence: GLYMA19G32420.1 (Glycine max), 5'ss of exon 4
lower sequence: AT3G57650.1 (Arabidopsis thaliana), 5'ss of exon 4
GTAAAGAGCATGCACTTGTGATAAGCAATCACAGAAGTGATATTGATTGGCTTGTTGGATGGGTTTCAGCTCAGgtgattgtcttagttggtctgatattttccacatcttcaatgaaagcaaattagcacaaattcatttgtgtattaatacaagtaatttattttattcgta-------
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GCAAAGAACATGCTCTTGTCGTTTGTAATCACCGAAGTGATATTGATTGGCTTGTGGGATGGATTCTGGCTCAGgtacata----atttcacctcacagtttcatctatcttcctacgtttttgtttgaatgcataaat--ggagatcaacataa-tagacttcttgatgagaaagcatgt
upper sequence: GLYMA19G32420.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv08s0007g08110.t01 (Vitis vinifera), 5'ss of exon 4
GTAAAGAGCATGCACTTGTGATAAGCAATCACAGAAGTGATATTGATTGGCTTGTTGGATGGGTTTCAGCTCAGgtgattgtcttagttggtctgatattttccacatcttca-atgaaagcaaattagcacaaattcatttgtgtattaatacaagtaatttattttattcgta-
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GTAAAGAACATGCACTTCTTATATCAAACCACAGAAGTGACATTGATTGGCTTGTTGGATGGGTTTTGGCTCAGgtg--cacactgctatattttgcaacttacccatgcatatgtacatttgctctctctctctctctctcacacatacacacacacacacacacacacacacacMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|209711485|gb|BW665237.1|BW665237EST: GCAATCACAGAAGTGATATTGATTGGCTTGTTGGATGGGTTTCAGCTCAG CGTTCAGGTTGTCT
genomic: GCAATCACAGAAGTGATATTGATTGGCTTGTTGGATGGGTTTCAGCTCAGgtgattgtct ... cattcaacagCGTTCAGGTTGTCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
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GTAAAGAGCATGCACTTGTGATAAGCAATCACAGAAGTGATATTGATTGGCTTGTTGGATGGGTTTCAGCTCAGgtgattgtcttagttggtctgatattttccacatcttcaatgaaagcaaattagcacaaattcatttgtgtattaatacaagtaatttattttattcgta
- - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA