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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGGTATAAGGTGGTCTATCATGTTAAATCAGAAAGAAAGTTTGATTTTCAACTGTCATTCACGGGTGTTGATGTTATAAAAGTGGCATCTAGTAGAAGgtaagttcctttttatttagaagacattgtagagcttgtatagcctatacctaataacccataaaattatttgttgtatcgattaaaacaactaataatggttcttggcag

Basic information

species Glycine max
transcript GLYMA19G30460.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193315414|gb|FK278456.1|FK278456
EST:     CAACTGTCATTCACGGGTGTTGATGTTATAAAAGTGGCATCTAGTAGAAG                         ACATGTTTATGGAGATGGAAAATGGAAAAGGGTGGAGACAATAGTGGAAGC
genomic: CAACTGTCATTCACGGGTGTTGATGTTATAAAAGTGGCATCTAGTAGAAGgtaagttcct ... ttcttggcagACATGTTTATGGAGATGGAAAATGGAAAAGGGTGGAGACAATAGTGGAAGC
EST: gi|193306339|gb|FK273320.1|FK273320
EST:     CAACTGTCATTCACGGGTGTTGATGTTATAAAAGTGGCATCTAGTAGAAG                         ACATGTTTATGGAGATGGAAAATGGAAAAGGGTGGAGACAATAGTGGAAGC
genomic: CAACTGTCATTCACGGGTGTTGATGTTATAAAAGTGGCATCTAGTAGAAGgtaagttcct ... ttcttggcagACATGTTTATGGAGATGGAAAATGGAAAAGGGTGGAGACAATAGTGGAAGC
EST: gi|193605534|gb|FK557324.1|FK557324
EST:     TGTTGATGTTATAAAAGTGGCATCTAGTAGAAG                         ACATGTTTATGGAGATGGAAAATGGAAAAGGGTGGAGACAATAGTGGAAGC
genomic: TGTTGATGTTATAAAAGTGGCATCTAGTAGAAGgtaagttcct ... ttcttggcagACATGTTTATGGAGATGGAAAATGGAAAAGGGTGGAGACAATAGTGGAAGC
EST: gi|208063849|gb|GD864215.1|GD864215
EST:     GTGGCATCTAGTAGAAG                         ACATGTTTATGGAGATGGAAAATGGAAAAGGGTGGAGACAATAGTGGAAGC
genomic: GTGGCATCTAGTAGAAGgtaagttcct ... ttcttggcagACATGTTTATGGAGATGGAAAATGGAAAAGGGTGGAGACAATAGTGGAAGC