Sequence
atgc intronic sequence ATGC exonic sequenceCATTATGGACTATGTCTCTGGTTCAGCTAGTCAGAACTTTGGCCTTCTGCAGGAATTCTATCAGACAACACTGCAAGCCCTTGAAGAAGCAAAGAATGAGgttaatacatttagatattatctttggctcatggtatttgtcattaatacaatcttatgtttattttttatgtcactcattttacag
Basic information
species | Glycine max |
transcript | GLYMA19G30100.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G30100.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os01g17180.1 (Oryza sativa), 5'ss of exon 4
CATTATGGACTATGTCTCTGGTTCAGCTAGTCAGAACTTTGGCCTTCTGCAGGAATTCTATCAGACAACACTGCAAGCCCTTGAAGAAGCAAAGAATGAGgttaatacatttagatattatctttggctcatggtatttgtcattaatacaatcttatgtttattttttatgtcactcattttacag
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CATTATGGATTTTGTCTCCGGATCAGCTAGTCAAAACTTCTCTCTTCTGCAAGAGTTCTACCAGACAACACTGAAAGCACTTGAAGAGGCAAAGAATGAGgtt----cagtttcttgccttatccaaattagaattttatgtaccaaaagattgttctttataccttgc-tattctttgctgcgcag
upper sequence: GLYMA19G30100.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G132804_T01 (Zea mays), 5'ss of exon 4
CATTATGGACTATGTCTCTGGTTCAGCTAGTCAGAACTTTGGCCTTCTGCAGGAATTCTATCAGACAACACTGCAAGCCCTTGAAGAAGCAAAGAATGAGgttaatacatttagatattatctttggctcatggtatttgtcattaatacaat---cttatgtttattttttatgtcactcattttacag
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CATAATGGATTTTGTTTCTGGATCAGCTAGTCAGAACTTTAGTCTTCTGCAAGAGTTCTACCAGACAACACTGAAAGCGCTTGAAGAAGCGAAAAATGAGgtcag---atttg----------ttggtttatgtaagatttttttaatgtgctgaactgttctttatagcctctatcattcaccgtgcag
upper sequence: GLYMA19G30100.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G079196_T01 (Zea mays), 5'ss of exon 4
CATTATGGACTATGTCTCTGGTTCAGCTAGTCAGAACTTTGGCCTTCTGCAGGAATTCTATCAGACAACACTGCAAGCCCTTGAAGAAGCAAAGAATGAGgttaatacatttagatattatctttggctcatggtatttgtcattaatacaatcttatgtttattttttatgtcactcattttacag
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CATAATGGATTTTGTTTCTGGATCAGCTAGTCAGAATTTTACTCTTCTGCAAGAGTTCTACCAGACAACACTGAAAGCGCTTGAAGAAGCGAAAAATGAGgtcggatttgttg--cattagatgaga---aaaaaattaagtgttga-acggttctttatacctttttt----tatttgctgtgcag
upper sequence: GLYMA19G30100.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv08s0040g00430.t01 (Vitis vinifera), 5'ss of exon 4
CATTATGGACTATGTCTCTGGTTCAGCTAGTCAGAACTTTGGCCTTCTGCAGGAATTCTATCAGACAACACTGCAAGCCCTTGAAGAAGCAAAGAATGAGgttaatacatttagatattatctttggctcatggtatttgtcattaatacaatcttatgtttattttttatgtcactcattttacag----
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CATCATGGATTTTGTTTCTGGATCAGCTAGCCAGAATTTTGGGCTTCTGCAAGAGTTTTACCAGACCACTCTGAAGGCCCTTGAAGAGGCAAAAAATGAGgttacgggtttt---ttttgtcttaaactt-tattgctcttcacttgttgaggatgttagttttaaaatatattactctcttgatgggcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192319385|gb|FK009927.1|FK009927EST: AGGAATTCTATCAGACAACACTGCAAGCCCTTGAAGAAGCAAAGAATGAG AGATTATGGTTTAAGACAAATCTTAAGCTTTGTAAGATCTTCTTTGATATT
genomic: AGGAATTCTATCAGACAACACTGCAAGCCCTTGAAGAAGCAAAGAATGAGgttaatacat ... cattttacagAGATTATGGTTTAAGACAAATCTTAAGCTTTGTAAGATCTTCTTTGATATT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CATTATGGACTATGTCTCTGGTTCAGCTAGTCAGAACTTTGGCCTTCTGCAGGAATTCTATCAGACAACACTGCAAGCCCTTGAAGAAGCAAAGAATGAGgttaatacatttagatattatctttggctcatggtatttgtcattaatacaatcttatgtttattttttatgtcactcattttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA