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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAGGGCTAAAAGGGGCAGTTGACAAAGCTGAAGAAATTGTTCGCAACACACCCAATGCGTACATGTTTCGGCAGTTTGATAACATGACTAATACAAAGgttaagtctcaatgcatctcctataagaccttcaccttatcaatcactgttttgaattatttagtgcatcattgaaaatagaaattgcaatataaattaagttacatgttattaagacttatatgcacaaattacag

Basic information

species Glycine max
transcript GLYMA19G29740.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G29740.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv08s0056g00820.t01 (Vitis vinifera), 5'ss of exon 4
GAAAGGGCTAAAAGGGGCAGTTGACAAAGCTGAAGAAATTGTTCGCAACACACCCAATGCGTACATGTTTCGGCAGTTTGATAACATGACTAATACAAAGgttaagtctcaatgcatctcctataagaccttcaccttatcaatcactgttttgaattatttagtgcatcattgaaaatagaaattgcaatataaattaagttacatgttattaagacttatatgcacaaattacag
||||||  |||||||||| ||||| |||||||||||||||||||  |  |  || || || ||||||||||  ||||||||||| ||| | ||| ||||||||  || ||  | |||||| |   |||| |  | | | |   |   | || | ||| || |  |   |  | ||    ||                                                        
GAAAGGTATAAAAGGGGCTGTTGATAAAGCTGAAGAAATTGTTCAGAGTATGCCAAACGCATACATGTTTCAACAGTTTGATAATATGGCCAATGCAAAGgtt--gtttctgt-catctcatgccagacataaagcctttttctttatattctaaat-atatgat--tttgtggatttcag--------------------------------------------------------