Sequence
atgc intronic sequence ATGC exonic sequenceGGTCTGGGTTCCCGCAGAGTGATGGCAATTGGTGCAGCTAAGCATCATATGGTTATTGCTACCCAGGGTGGGGAAGTGTTCACTTGGGGATCCAATAGAGgtaaaacttgacaatattcatgtttgtataagttgtgagtcttgtgagttgttactgtaaactacactggattgcaatcaaataatcttttcccctgcat...
Basic information
species | Glycine max |
transcript | GLYMA19G29100.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G29100.1 (Glycine max), 5'ss of exon 4
lower sequence: AT3G03790.3 (Arabidopsis thaliana), 5'ss of exon 5
GGTCTGGGTTCCCGCAGAGTGATGGCAATTGGTGCAGCTAAGCATCATATGGTTATTGCTACCCAGGGTGGGGAAGTGTTCACTTGGGGATCCAATAGAGgtaaaacttgacaatattcatgtttgtataagttgtgagtcttgtgagttgttactgtaaactacactggattgcaatcaaataatcttttcccctgcat--------------------------------------------------------------------------------------------
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GGTTTAGGATCTCGCCGTGTAAAAGCAGTTGCGGCAGCTAAGCACCACACTGTTATTGCTACAGAAGGCGGGGATGTGTACACATGGGGTTCCAATAGAGgtaaaacacttaaacggcttcctatatttcaggaatggatctttagtgctat-agtatactcaagttttagtttcgacctctaagcccagtttcttagttaatctgaattagatggaaatatattcaatctatttgggtcacctcgtggtcttttatcttagagtctgatgttgtttgtgatgctcttgtag
upper sequence: GLYMA19G29100.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv08s0032g00280.t01 (Vitis vinifera), 5'ss of exon 6
GGTCTGGGTTCCCGCAGAGTGATGGCAATTGGTGCAGCTAAGCATCATATGGTTATTGCTACCCAGGGTGGGGAAGTGTTCACTTGGGGATCCAATAGAGgtaaaacttgacaatattcatgtttgtataagttgtgagtctt-gtgagttgttactgtaaactacactggattgc--aatcaaataatcttttcccctgcat
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GGTTTAGGTTCACGCCGGGTAAAGGCAATTGCAGCAGCTAAACATCACACTGTTGTTGCAACAGAGGGTGGGGAAGTGTTCACTTGGGGATCCAATAGAGgtaaacttt--tagcgggtattttagactaagttctgaatttgagtttgccaatccaatcaattggttatgattgttgaatccagctctgttggccatatta-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208127376|gb|GD924464.1|GD924464EST: GTGTTCACTTGGGGATCCAATAGAG AGGGACAGCTTGGGTACCCTTCTGTTGATACACAACCCACACCTCGTAGAG
genomic: GTGTTCACTTGGGGATCCAATAGAGgtaaaacttg ... tgttgtgcagAGGGACAGCTTGGGTACCCTTCTGTTGATACACAACCCACACCTCGTAGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGTCTGGGTTCCCGCAGAGTGATGGCAATTGGTGCAGCTAAGCATCATATGGTTATTGCTACCCAGGGTGGGGAAGTGTTCACTTGGGGATCCAATAGAGgtaaaacttgacaatattcatgtttgtataagttgtgagtcttgtgagttgttactgtaaactacactggattgcaatcaaataatcttttcccctgcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttcccc