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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAAAGAGCAACTTCAAGATAGTGACTGATGATGAGATTGATGTTGCACATTCAGGCCAATATCTTCTAAATCTTCCCATTACTGTTGATGAATCTAAGgtttgtgcataataatgctcctttaatggaaaatggtaccttgagatgcttgattttgctgctaatagttgctgatgtctgtattttttgctgatgaag

Basic information

species Glycine max
transcript GLYMA19G27800.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G27800.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os12g29550.1 (Oryza sativa), 5'ss of exon 4
GGAAAAGAGCAACTTCAAGATAGTGACTGATGATGAGATTGATGTTGCACATTCAGGCCAATATCTTCTAAATCTTCCCATTACTGTTGATGAATCTAAGgtttgtgcataataatgctcctttaatggaaaatggtaccttgagatgcttgattttgctgctaatagttgctgatgtctgtattttttgctgatgaag
||||||||||||||||||| |  |  ||||||| |||  |||||||||||| || ||  ||||||||||||| |||||||| |  ||||||||  ||||||| ||     ||  |||  | ||| | | |      |    ||  | | || || || | | | |  |    |||| ||  |   || |          
GGAAAAGAGCAACTTCAAGTTGTTATCTGATGAAGAGTATGATGTTGCACAATCTGGAAAATATCTTCTAAACCTTCCCATAAAAGTTGATGAGCCTAAGgtctgg----aactatggccttttcaagca------tgtactgtaacgtttcatgtt-cggatgactga-attgatttcgttgaattgtag--------

upper sequence: GLYMA19G27800.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G161168_T02 (Zea mays), 5'ss of exon 4
GGAAAAGAGCAACTTCAAGATAGTGACTGATGATGAGATTGATGTTGCACATTCAGGCCAATATCTTCTAAATCTTCCCATTACTGTTGATGAATCTAAGgtttgtgcataataatgctcctttaatggaaaatggtaccttg-agatgcttgattt--tgctgctaatagttgctgatgtctgtattttttgctgatgaag
|||||||||||| || || ||||| | ||| |||||| ||||  |||| ||||| || ||||||||  | |||||||||||||  ||||||||||| |||||           ||||||  ||   || ||||||     ||  | |   || | |   |  || |   |  | |  || |  || ||||  |         
GGAAAAGAGCAATTTTAACATAGTAAATGACGATGAGGTTGAACTTGCTCATTCTGGACAATATCTGTTGAATCTTCCCATTAAAGTTGATGAATCAAAGgtg----------aatgctgtttccgtgcaaaatgtcttgttatacaaaattcactaaattttgatgtgaaatcccaat-ttggtcttttccgtgagcag--

upper sequence: GLYMA19G27800.1 (Glycine max), 5'ss of exon 4
lower sequence: AT3G19340.1 (Arabidopsis thaliana), 5'ss of exon 4
GGAAAAGAGCAACTTCAAGATAGTGACTGATGATGAGATTGATGTTGCACATTCAGGCCAATATCTTCTAAATCTTCCCATTACTGTTGATGAATCTAAGgtttgtgcataataatgctcctttaatggaaaatggtaccttgagatgcttgattttgctgctaatagttgctgatgtctgtattttttgctgatgaag
||| ||||||||||| || |||   | | |||| ||||| || |||||||| || || || |||||||| ||||||||||| |  |||||||| ||||||||||||  | || ||   | |  |||||             || | |||  |  ||       |||||||       |   |  |||| |  |||||||
GGAGAAGAGCAACTTTAAAATAACAAGTAATGAAGAGATGGAAGTTGCACACTCTGGGCAGTATCTTCTCAATCTTCCCATCAAAGTTGATGAGTCTAAGgtttgttta-aacaaactttcactaatgc---------ttgtgtgttgccgggattcttataaaatagtt-------ttcttgcttttggtggatgaag

upper sequence: GLYMA19G27800.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv14s0068g01000.t01 (Vitis vinifera), 5'ss of exon 4
GGAAAAGAGCAACTTCAAGATAGTGACTGATGATGAGATTGATGTTGCACATTCAGGCCAATATCTTCTAAATCTTCCCATTACTGTTGATGAATCTAAGgtttgtgcataataatgctcctttaatggaaaatggtaccttgagatgcttgattttgctgctaatagttgctgatgtctgtattttttgctgatgaag------------------------
||| |||||||||||||||||||  ||||| || |||||||||||||| |  ||||| || ||||| |||||||||||||| || ||||||||||| ||||||| |   || ||||  |     | |  | ||   |   |||| ||   |   | |  ||    || || || ||||   |    |||||||||                            
GGAGAAGAGCAACTTCAAGATAGCAACTGAGGAAGAGATTGATGTTGCTCTCTCAGGGCAGTATCTCCTAAATCTTCCCATCACAGTTGATGAATCCAAGgtttctaattactaat-ttaaacaagtacagaaatatctattgatatatatatatatattgtc--tattttctcatgttcatcacatttgctgatcccattgttgttttcttaatggctgtag