Sequence
atgc intronic sequence ATGC exonic sequenceTACAATGCACAGTTTAAGAAATTTGAGCCTTTGGAGTACAATTATGATTTGTGTGAGACAATCCTATTGTGGGAACAGgtgcattgtcttgtcatcccttttgcccctgcttaagtagtaatttcaagattagtatttacaagtgttgatatgttgagaggttgcag
Basic information
species | Glycine max |
transcript | GLYMA19G27570.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G27570.2 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G119791_T07 (Zea mays), 5'ss of exon 4
TACAATGCACAGTTTAAGAAATTTGAGCCTTTGGAGTACAATTATGATTTGTGTGAGACAATCCTATTGTGGGAACAGgt--gcattgtcttgtcatcccttttgcccctgcttaagtagtaatttcaagattagtat--ttacaagtgttgatatgttgagaggttgcag
|| ||||| ||||| |||| ||||| ||| | || ||||| |||||| | ||||| || |||||||||||||||||||| | | |||| | | || ||| || | | | || | || ||| | ||
TATAATGCTCAGTTCAAGATTTTTGAACCTCTAGAATACAAATATGATGTCTGTGAAACTATCCTATTGTGGGAACAGgttagtacattcttctagactaacatgtttgctcttgt-tactcgtgttaatactaatatggtcgcag-------------------------
upper sequence: GLYMA19G27570.2 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G119791_T04 (Zea mays), 5'ss of exon 4
TACAATGCACAGTTTAAGAAATTTGAGCCTTTGGAGTACAATTATGATTTGTGTGAGACAATCCTATTGTGGGAACAGgt----gcattgtcttg--tcatcccttttgcccctgct-taagtagtaatttcaagat-----tagtatttacaagtgttga-tatgttgagaggttgcag
|| ||||| ||||| |||| ||||| ||| | || ||||| |||||| | ||||| || |||||||||||||||||||| |||| | | | | ||||| | || | || |||| || || |||| | || | | | |||| | |
TATAATGCTCAGTTCAAGATTTTTGAACCTCTAGAATACAAATATGATGTCTGTGAAACTATCCTATTGTGGGAACAGgttagtacattcttctagactaacatgtttgctcttgttactcgtgttaatactaatatggtcgcagtaccgcaacatgacaactgtattgacaag------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151409708|gb|EV279516.1|EV279516EST: TTGGAGTACAATTATGATTTGTGTGAGACAATCCCTATTGTGGGGAACAG TATCGGAACATGACTACGGTGTTGACCAGAGAGTATCTTGATGCTCGCCC
genomic: TTGGAGTACAATTATGATTTGTGTGAGACAATCC-TATTGTGGG-AACAGgtgcattgtc ... gaggttgcagTATCGGAACATGACTACGGTGTTGACCAGAGAGTATCTTGATGCTCGCCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TACAATGCACAGTTTAAGAAATTTGAGCCTTTGGAGTACAATTATGATTTGTGTGAGACAATCCTATTGTGGGAACAGgtgcattgtcttgtcatcccttttgcccctgcttaagtagtaatttcaagattagtatttacaagtgttgatatgttgagaggttgcag
- - - - - - - - - - - - - - - TTGGAG