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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCATATATCTTGTTGGGGAATCTTTAGGAGCATGCCTTGCACTGGCTGTTGCGGCACTTAACCCTGATATTGATCTTGTTCTAATTTTGGCGAACCCAGgtaacttttagtgatgaagataagatttattctcttggattttattgttccagacaattcagcaccattaacatgactgaaagtaaaagtttaactttag...

Basic information

species Glycine max
transcript GLYMA19G27200.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G27200.1 (Glycine max), 5'ss of exon 4
lower sequence: AT3G02030.1 (Arabidopsis thaliana), 5'ss of exon 4
CCCATATATCTTGTTGGGGAATCTTTAGGAGCATGCCTTGCACTGGCTGTTGCGGCACTTAACCCTGATATTGATCTTGTTCTAATTTTGGCGAACCCAGgtaacttttagtgatgaagat-----aagatttattctcttggattttattgttc--cagacaattcagcaccatta-acatgactgaaagtaaaagtttaactttag--
||||||||||||||||| |||||| | || || ||| ||||||| |||||||| ||   |||||||||||||||||||||  | ||| |  | ||||||||| || || |    |    ||     | || ||  ||  ||| || |  |||  |   || |   |||   |   || |  |||   ||||   |   ||   |||    
CCCATATATCTTGTTGGAGAATCTCTCGGCGCCTGCATTGCACTCGCTGTTGCAGCCTGTAACCCTGATATTGATCTTGTCTTGATTCTTTCTAACCCAGgtgacgttgatcctttcttatttcctaggactttctcatttgtatgtgtttgaacattagtcttatcacgtcgtctagatttgatctaaagagtattgttgcatttgcag

upper sequence: GLYMA19G27200.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv14s0068g01440.t01 (Vitis vinifera), 5'ss of exon 4
CCCATATATCTTGTTGGGGAATCTTTAGGAGCATGCCTTGCACTGGCTGTTGCGGCACTTAACCCTGATATTGATCTTGTTCTAATTTTGGCGAACCCAGgtaac--ttttagtgatgaagataagatttattctcttggattttattgttccagacaattcagcaccattaaca-tgactgaaagtaaaagtttaactttag
|||||||| |||||||| |||||| | |||| ||||||||| || |||||||| || | ||||||||||||||||||||  || |||||||| ||||||||| |    ||   |  || | || |  || ||        ||  | |   |  |   | ||||   | || ||   |   |   | |   ||   || ||   
CCCATATACCTTGTTGGAGAATCTCTTGGAGGATGCCTTGCTCTAGCTGTTGCAGCCCGTAACCCTGATATTGATCTTGCACTCATTTTGGCTAACCCAGgtgagaacttcctttttgtaaattatgttgatgagagcttatactttcacttgattta-ttcactgctataaatggtccttttcaattccagcaaaaattc--

upper sequence: GLYMA19G27200.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv14s0068g01430.t01 (Vitis vinifera), 5'ss of exon 4
CCCATATATCTTGTTGGGGAATCTTTAGGAGCATGCCTTGCACTGGCTGTTGCGGCACTTAACCCTGATATTGATCTTGTTCTAATTTTGGCGAACCCAGgt---aacttttagtgatgaagataagatttattctcttggattttattgttccagacaattcagcaccattaacatgactgaaagtaaaagtttaactttag---
|||||||| || || || |||||| | |||| ||||||||| ||||||||||| || | ||| ||||| || |||||||  || |||||||| |||||||||   ||  |    |  |    || |  || ||      |||  |||  | |  ||   |||    |    ||  ||   |   | |    |   ||||| |    
CCCATATACCTAGTCGGAGAATCTCTCGGAGGATGCCTTGCTCTGGCTGTTGCAGCCCGTAATCCTGACATCGATCTTGCACTGATTTTGGCCAACCCAGgtgagaagctcctctcctatgaatgatgttgatg-----ggagcttagagatt-agctgattttttatgcctataatcctttggaattcctggcaaacttaaaaca

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254319091|gb|GR828819.1|GR828819
EST:     TGCGGCACTTAACCCTGATATTGATCTTGTTCTAATTTTGGCGAACCCAG                         CTACATCATTCAGGAGGTCAAGCTTGCAACTTCTAACACCATTATTGGAAG
genomic: TGCGGCACTTAACCCTGATATTGATCTTGTTCTAATTTTGGCGAACCCAGgtaactttta ... aatttggcagCTACATCATTCAGGAGGTCAAGCTTGCAACTTCTAACACCATTATTGGAAG
EST: gi|209709677|gb|BW657206.1|BW657206
EST:     TGCGGCACTTAACCCTGATATTGATCTTGTTCTAATTTTGGCGAACCCAG                         CTACATCATTC
genomic: TGCGGCACTTAACCCTGATATTGATCTTGTTCTAATTTTGGCGAACCCAGgtaactttta ... aatttggcagCTACATCATTC