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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTCCAGCCTCCATAGTGTTGATAATTTACACCTTTATATCAATGTGGTTTGTAGGTGGCCTCACTGCCTTCCATTTGTATTTGATAAGTACCAATCAGgtaagcacagttctttttaatccgcatgctctagctgttcagatgtatatggcttcatatttgctccattattcttgcag

Basic information

species Glycine max
transcript GLYMA19G27160.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G27160.1 (Glycine max), 5'ss of exon 4
lower sequence: AT3G26935.1 (Arabidopsis thaliana), 5'ss of exon 4
AACTCCAGCCTCCATAGTGTTGATAATTTACACCTTTATATCAATGTGGTTTGTAGGTGGCCTCACTGCCTTCCATTTGTATTTGATAAGTACCAATCAGgtaagcacagttctttttaatccgcatgctct----agctgttcagatgtatatggcttcatatttgctccattattcttgcag
|||||| |||||||| ||  | ||||| ||||| || ||||||||||||||||| |||||| | || |  |||||||| ||| | || || || || |||||| |       |  |  ||||| ||  ||||    ||   |   | | | | ||    |||   |    | || |||||||||
AACTCCTGCCTCCATTGTTCTAATAATATACACATTCATATCAATGTGGTTTGTTGGTGGCTTAACAGTTTTCCATTTATATCTCATCAGCACGAACCAGgtatgt-tgcgaccatccaatccccaccctctcttaaggaatcacggtatctctgtaaccattgatttatctttgttcttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17518880|gb|BM187922.1|BM187922
EST:     TTGTAGGTGGCCTCACTGCCTTCCATTTGTATTTGATAAGTACCAATCAG                         ACTACATATGAAAACTTCAGATACCGATATGATCGGCGAGCCAACCCATAT
genomic: TTGTAGGTGGCCTCACTGCCTTCCATTTGTATTTGATAAGTACCAATCAGgtaagcacag ... attcttgcagACTACATATGAAAACTTCAGATACCGATATGATCGGCGAGCCAACCCATAT
EST: gi|151412254|gb|EV282066.1|EV282066
EST:     TTGTAGGTGGCCTCACTGCCTTCCATTTGTATTTGATAAGTACCAATCAG                         ACTACATATGAAAACTTCAGATACCGATATGATCGGCGAGCCAACCCATAT
genomic: TTGTAGGTGGCCTCACTGCCTTCCATTTGTATTTGATAAGTACCAATCAGgtaagcacag ... attcttgcagACTACATATGAAAACTTCAGATACCGATATGATCGGCGAGCCAACCCATAT