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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAATCTAGATTGGACATGGAAGGGGAACGAAGATTCTACTTATGTAATGATTTGAGGGTTGTGTTCCCTCAACGTCATTCTGATGCCGATGAGGGCAAGgtatgtccctatgttgtggttttgttactgtattgcttttttcttcagtgtcatactaaagcagcctaaagcaatatggcttcagactgcatatcttgaa...

Basic information

species Glycine max
transcript GLYMA19G26870.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G26870.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv14s0068g01450.t01 (Vitis vinifera), 5'ss of exon 6
AAAATCTAGATTGGACATGGAAGGGGAACGAAGATTCTACTTATGTAATGATTTGAGGGTTGTGTTCCCTCAACGTCATTCTGATGCCGATGAGGGCAAGgtatgtccctat-gttgtggttttgttactgtattgcttttttcttcagtgtcatactaaagcagcctaaagcaatatggcttcagactgcatatcttgaa---
|| | || | || ||||| ||||| ||  | |||||||| ||||  ||||||||||||||||| ||||||||||| ||||| ||||| ||||||||||||||||||   | | | |     | |   |  || |||  ||  | ||     |  | | |||     ||  | |   ||   |      |  ||  ||   |   
AAGAACTTGCTTAGACATTGAAGGAGAGAGGAGATTCTATTTATACAATGATTTGAGGGTTGTATTCCCTCAACGACATTCGGATGCTGATGAGGGCAAGgtatgtggttctagcttcacatataacatggttttgtgttgcttttttacatggttccaaaat---ctgcatctg-atatttatgatgttaatgcctcagacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10238356|gb|BE807172.1|BE807172
EST:     AGGGTTGTGTTCCCTCAACGTCATTCTGATGCCGATGAGGGCAAG                         TTGAACGTGGAATACCATTTCCCTGAAGATCCAAGATACTTTGACATCAAC
genomic: AGGGTTGTGTTCCCTCAACGTCATTCTGATGCCGATGAGGGCAAGgtatgtccct ... tgtttggcagTTGAACGTGGAATACCATTTCCCTGAAGATCCAAGATACTTTGACATCAAC
EST: gi|208138000|gb|GD939378.1|GD939378
EST:     ATTTGAGGGTTGTGTTCCCTCAACGTCATTCTGATGCCGATGAGGGCAAG                         TTGAACGTGGAATACCATTTCCCTGAAGATCCAAGATACTTTGACATCAAC
genomic: ATTTGAGGGTTGTGTTCCCTCAACGTCATTCTGATGCCGATGAGGGCAAGgtatgtccct ... tgtttggcagTTGAACGTGGAATACCATTTCCCTGAAGATCCAAGATACTTTGACATCAAC