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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTCAGGCCAGTATTGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAGgtatgaaggaatattgctattttaaactaaaaagaatcattccatgacattgatttgtccctgttggtttctgtcattgatggagtggaatttgttattgttattggatattgcag

Basic information

species Glycine max
transcript GLYMA19G25870.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G25870.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os05g41930.1 (Oryza sativa), 5'ss of exon 5
TGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTCAGGCCAGTATTGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAGgtatgaaggaatattgctattttaaactaaaaagaatcattccatgacattgatttgtccc-tgttggtttctgt--cattgatggagtgg----aatttgttattgttattggatatt-gcag
  | || |||||||||||| | |||||||| ||| ||||||| |||||  |||| ||||| || || ||||||||||||||||| || ||  |  | |||||||| |||  |||| |||||       | |  |  | | |  || |  ||  | | | |  | |||  ||      ||   |||  |       || |    | | | ||   | |||  |||
CATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTCAGACCAGTGCTGCACCATTACGATGGTCCAAAGTTTCGTCTTGAGCTCTCCATAGCTGAGgtatgtaggt-tattactattactgtgcacatggtttgact--ataatgttactatatgcagtattgaattgcacaacaaaaatgtggccatgcaaactgagcaatatcatcttaaatttacag

upper sequence: GLYMA19G25870.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G033117_T01 (Zea mays), 5'ss of exon 5
TGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTCAGGCCAGTATTGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAGgtatgaaggaatattgctattttaaa--ctaaaaagaatcattccatgacattgatttgtccctg-ttggtttctgtcattgatggagtggaatttgttattgttatt-ggatattgcag------------------------------------
  | |||||||| |||||| | |||||||| ||||| ||||||||||| ||||| |||||||| ||||||||||| || ||||| || ||  |  | |||||||       | |   |||   | |   ||    |  |            | |||||| ||| |  || ||| | |  |  |||          |    ||||| |   |||  |   |                                    
CATTAGGAAGCTGTGCAAGCCGTTGGAAGAGGATTCCTTCAGGCCAGTTTTGCACCATTATGATGGGCCAAAGTTCCGCCTTGAGCTCTCCATCGCGGAGgtatattatgctgtcattatagaagaagttatggggggtagagtttgtttgtagatttggcccaggctgttttgttttctctatgtttcatctcataaagttgttgtccagatggtcatgtgaaccagttctcacgcacggaatttaaatctgcag

upper sequence: GLYMA19G25870.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G011923_T01 (Zea mays), 5'ss of exon 5
TGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTCAGGCCAGTATTGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAGgtatg-aaggaatattgctattttaaacta-aaaagaatcattccatgaca-ttgatttgtccctgttggtttctgtcattgatggagtggaatttgttattgttattggatattgcag
 || |||||||| |||||| | |||||||| ||||| ||||||||||| ||||| || ||||| || ||||||||||| || || || ||  |  | |||||||  |   |  ||  | | | |    |  | | |||| || | |||| |  |   ||||          |||  | | ||      || |   | |                     
CGTTAGGAAGCTGTGCAAGCCGTTGGAAGAGGATTCCTTCAGGCCAGTTTTGCACCACTATGATGGCCCAAAGTTTCGCCTCGAGCTCTCCATCGCGGAGgtatatatatagcatatccagtctgctgtgcacatgaattatacaatgaaagctcccttgtgtaatgcaacttccattagtgtcactatgcacactatgt-------------------

upper sequence: GLYMA19G25870.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv14s0068g02040.t01 (Vitis vinifera), 5'ss of exon 5
TGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTCAGGCCAGTATTGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAGgtatgaaggaatattgctattttaaactaaaaagaatcattccatgacattgatttgtccctgttggtttctgtcattgatggagtggaatttgttattgttattggatattgcag--------------------------------------------------
||| ||||| || |||||||||||||| |||||| |||| ||||| ||  ||||||| ||||| || || ||||| || ||||| || |||||||||||||||   | |  |     ||   |    |  | | | |  |    |   |    ||  |     ||| ||   ||     ||  |     || | | ||    |||     | |                                                     
TGTTAGGAACCTATGCAAGGCATTGGAGGAAGATGCTTTTAGGCCTGTCCTGCATCACTATGATGGACCTAAGTTCCGCCTTGAGCTTTCAGTTCCAGAGgtaaataagtgtcccaataagatttggtgtacaaatttttggggttgtaccttttctttttctttgcttatagttgaatatatatatatatatat-atatacattaagcctagtgtttttattgtttgtatttattttgaactgagttttgttggtgattctgcag

upper sequence: GLYMA19G25870.1 (Glycine max), 5'ss of exon 5
lower sequence: PP1S168_104V6.2 (Physcomitrella patens), 5'ss of exon 5
TGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTCAGGCCAGTATTGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAGgtatgaaggaatattgctattttaaactaaaaagaatcattccatgacattgatttgtccctgttggtttctgtcattgatggagtggaatttgttattgttattggatattgcag
| |  | ||||  || ||| | || ||||| || || |||||||||||  ||||||| ||||| ||||| ||||| |||||| | || || ||||||||||||| |     ||||    | ||||||     | || | | |  |    |    | |      |  |        | |||| |||| |||    ||  || || |   |||     
TATTCGAAAGCAGTGTAAGCCTTTAGAAGAGGACTCATTCAGGCCAGTGCTGCATCACTATGATGGGCCCAAGTTCCGTCTTCAGCTCTCTGTTCCAGAGgtatca-----tatttaactcttaaac-----acaaccgtccgcttcgttcagctcggtatcttgtgcaaagagtaatgattgagttgaa--aatttatgatagtcagtatc----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10237175|gb|BE806063.1|BE806063
EST:     TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
genomic: TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAGgtatgaagga ... gatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
EST: gi|213588131|gb|DB979209.1|DB979209
EST:     GCATCATTTA-GACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
genomic: GCATCA-TTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAGgtatgaagga ... gatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
EST: gi|254346377|gb|GR856099.1|GR856099
EST:     TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
genomic: TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAGgtatgaagga ... gatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
EST: gi|21678397|gb|BQ630748.1|BQ630748
EST:     TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
genomic: TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAGgtatgaagga ... gatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
EST: gi|192317683|gb|FK009023.1|FK009023
EST:     TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAG                         ACCCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
genomic: TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAGgtatgaagga ... gatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
EST: gi|254324154|gb|GR836279.1|GR836279
EST:     TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
genomic: TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAGgtatgaagga ... gatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
EST: gi|208271560|gb|GE071828.1|GE071828
EST:     CGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
genomic: CGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAGgtatgaagga ... gatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
EST: gi|7234612|gb|AW569948.1|AW569948
EST:     TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
genomic: TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAGgtatgaagga ... gatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
EST: gi|19935119|gb|BQ080149.1|BQ080149
EST:     TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
genomic: TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAGgtatgaagga ... gatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA