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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGCAAGTTTTGGTGGCTCTAACATAGATCCAACTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtagtagaatataggactttgaaatggtggagaccatgtatgagcttatctgtaaatcaatgaataaaacaaaaaatttgtgcctcctcttccttgtag

Basic information

species Glycine max
transcript GLYMA19G25870.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G25870.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G011923_T01 (Zea mays), 5'ss of exon 4
GCAGCAAGTTTTGGTGGCTCTAACATAGATCCAACTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtagtagaatataggactttgaaatggtggagaccatgtatgagcttatctgtaaatcaatgaataaaacaaaaaatttgtgcctcctcttccttgtag
|| || ||||||||||| ||||| || ||||| ||||| ||||||||||| || || ||||| ||||| || || ||||| |||||| |     |||  | | ||  ||  ||     ||| | | | ||  | ||    |   |   |   |||      |  || |               
GCTGCCAGTTTTGGTGGGTCTAATATTGATCCCACTGCATGGGAGGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAGgtactg----ataaca-tctgtcattatgtg---catttctcatctcctttg---gtttcttgctctgacaccttcatcatgtcag-------------

upper sequence: GLYMA19G25870.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G033117_T01 (Zea mays), 5'ss of exon 4
GCAGCAAGTTTTGGTGGCTCTAACATAGATCCAACTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtagtagaatataggactttgaaatggtggagaccatgtatgagcttatctgtaaatcaatgaataaaacaaaaaatttgtgcctcctcttccttgtag-
|| || ||||||||||| || || || ||||| ||||| ||||||||||| || || ||||| ||||| || || ||||| |||||| | | | | |  | ||     |  |   |  |||   | |  |  | | | | ||  ||     |             |  ||||   || |||   
GCTGCCAGTTTTGGTGGGTCCAATATCGATCCTACTGCATGGGAGGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAGgtactggta-acatcattt----gtcattacgttcattcctcatttccttt-tgattccttgctctga------------cgtttccttcaccatgttag

upper sequence: GLYMA19G25870.1 (Glycine max), 5'ss of exon 4
lower sequence: AT3G27090.1 (Arabidopsis thaliana), 5'ss of exon 4
GCAGCAAGTTTTGGTGGCTCTAACATAGATCCAACTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtagtagaatataggactttgaaatggtggagaccatgtatgagcttatctgtaaatcaatgaataaaacaaaaaatttgtgcctcctcttccttgtag
||| ||| |||||| ||  |||| || ||| | ||||| ||||| || ||||| |||||||| || ||||||||||| ||||||||     ||  ||     |   ||||      |   | | | ||  | | | |  || |     ||  |  | || ||  | |       |  |   ||
GCAACAACTTTTGGAGGTACTAATATTGATGCTACTGCTTGGGAAGACAAAAAGTGCAAAGGAGAGTCAAGGTTTCCGGCTCAGgtga---aacttaaa---tcacaatgactttcattgt-tttaagtctttattttgat-atcttgtactaatataacttctttctcttaaattgtaacag

upper sequence: GLYMA19G25870.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv14s0068g02040.t01 (Vitis vinifera), 5'ss of exon 4
GCAGCAAGTTTTGGTGGCTCTAACATAGATCCAACTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtagtagaatataggactttgaaatggtggagaccatgtatgagcttatctgtaaatcaatgaataaaacaaaaaatttgtgcctcctcttccttgtag
||||| |||||||| ||||||||||| |||||||| || ||||| || |||||||||||||| ||||| |||||||| |||||||||    |||||    | ||||     || |   | |  || | | |       | ||  | | | |  || |  ||||     ||  |       |||
GCAGCTAGTTTTGGGGGCTCTAACATTGATCCAACCGCATGGGAAGACAAAAAATGCAAAGGCGAATCGAGGTTTCCTGCTCAGgtaa---aatat----cattgatgaactgaaacacttaaattatcattctcaagactcccttactgagtcatagtattt-catttctcccaataaatag

upper sequence: GLYMA19G25870.1 (Glycine max), 5'ss of exon 4
lower sequence: PP1S168_104V6.1 (Physcomitrella patens), 5'ss of exon 4
GCAGCAAGTTTTGGTGGCTCTAACATAGATCCAACTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtag-----tagaatataggactttgaaatggtggag-accatgtatgagct-tatctgtaaatcaatgaataaaacaaaaaatttgtgcctcctcttccttgtag-----------------
|||||||||||||| ||||| |||||||| ||||| |||||||| || || |||||   ||| ||||| || ||||| |||||||| |      | |  || |   | | |||| |||    ||  | |   || |  |  | ||||| | |   || ||||     |  ||  || ||  |||    |                  
GCAGCAAGTTTTGGAGGCTCAAACATAGACCCAACCGCCTGGGAAGACAAGAAATGTCGAGGAGAATCGAGATTTCCTGCTCAGgttgaatctcaaagcattgcgatgttaaatagtgattcacggtttgccagatacaaatttaaat-agtaggtagaacatttgttaagtcactgcttatccactcaatttttatttgaccgtag

upper sequence: GLYMA19G25870.1 (Glycine max), 5'ss of exon 4
lower sequence: PP1S4_323V6.1 (Physcomitrella patens), 5'ss of exon 3
GCAGCAAGTTTTGGTGGCTCTAACATAGATCCAACTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtag-----tagaatataggactttgaaatggtggagaccatgtatgagcttatctgtaaatcaatgaataaaacaaaaaatttgtgcctc-------ctcttccttgtag
|||||||||||||| |||||||||||||||||||| |||||||| || || |||||    || || ||||| ||||| || ||||| |      | |  |      | |  |||  ||  | |  |||   |||| |  |      |    |  | |   |   |||  |  ||        ||| |  || |||
GCAGCAAGTTTTGGAGGCTCTAACATAGATCCAACCGCCTGGGAAGACAAGAAATGTCGGGGAGAGTCAAGATTTCCTGCCCAGgttggctctcaaaccacgacgttgttgaatattgt-gtcgctgttcaagctaaatttaggtcctgctagaacactgaccgattcattgctaacccgcactcatttttctag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|57574688|gb|CX547663.1|CX547663
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|193664031|gb|FK609941.1|FK609941
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTACTAGCAAGGCATTGGAAGAAGATTCTT
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCT-CT-GCAAGGCATTGGAAGAAGATTCTT
EST: gi|7285096|gb|AW597583.1|AW597583
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|6726683|gb|AW311047.1|AW311047
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|23734098|gb|BU765269.1|BU765269
EST:     GCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: GCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|14205633|gb|BG839311.1|BG839311
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|16345270|gb|BI970865.1|BI970865
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|298165387|gb|HO011436.1|HO011436
EST:     CTGCCTGGGAGGATAAAAAATGC-AAGGGGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|11275143|gb|BF325466.1|BF325466
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|208279500|gb|GE080875.1|GE080875
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|254340597|gb|GR850899.1|GR850899
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|31308502|gb|CD393705.1|CD393705
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|15286212|gb|BI470103.1|BI470103
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|14991766|gb|BI317439.1|BI317439
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGAATTGGAAGAAAATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|10237029|gb|BE805917.1|BE805917
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|6482567|gb|AW201818.1|AW201818
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|15200000|gb|BI424118.1|BI424118
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|16996811|gb|BM086183.1|BM086183
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|15663461|gb|BI700832.1|BI700832
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|7233125|gb|AW568475.1|AW568475
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|192334782|gb|FK025273.1|FK025273
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|254339779|gb|GR857904.1|GR857904
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|7234612|gb|AW569948.1|AW569948
EST:     AGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: AGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|254335019|gb|GR844804.1|GR844804
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|8283592|gb|BE021151.1|BE021151
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|192304166|gb|FG993492.1|FG993492
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCGGCTCAG                         GTAAGAATCCGTGTCAGGAAGTTTTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|4289775|gb|AI437974.1|AI437974
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|7693250|gb|AW761345.1|AW761345
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|15337153|gb|BI497809.1|BI497809
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|10237175|gb|BE806063.1|BE806063
EST:     AAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: AAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|16105386|gb|BI893126.1|BI893126
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|58019845|gb|CX706587.1|CX706587
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|192299947|gb|FG991807.1|FG991807
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|192316546|gb|FK009315.1|FK009315
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCAGCAAGTTTTGGTGGCTCTAACATAGATCCAACTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtagtagaatataggactttgaaatggtggagaccatgtatgagcttatctgtaaatcaatgaataaaacaaaaaatttgtgcctcctcttccttgtag

- - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA