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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGAAGTTATTCAAAGGGAAGAAGCAATAAGAAAAGAGTATAATGAACTTGACACAGTCTGGTTTATGGCAGGTTCTCTATTTCAGgtaataaaatttccccgaacaagttcagtagttatgtacattttgagatttagtgcttacattatttgcataaatataatgcag

Basic information

species Glycine max
transcript GLYMA19G22520.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G22520.2 (Glycine max), 5'ss of exon 4
lower sequence: AC198982.3_FGT006 (Zea mays), 5'ss of exon 2
GATGAAGTTATTCAAAGGGAAGAAGCAATAAGAAAAGAGTATAATGAACTTGACACAGTCTGGTTTATGGCAGGTTCTCTATTTCAGgtaata---aaatttccccgaacaagttcagtagttat-gtacattttga-gatttagtgcttacattatttgcataaatataatgcag
||||||||| ||   || || || |||||||| | |||||||||||| ||||||||| | ||||||||||||||||| |||||||||||| |     |  ||||  | | |  | |   |   || |   |||| |   | ||| |   |   | |     || | | |  |||||
GATGAAGTTGTTGCTAGAGATGAGGCAATAAGGAGAGAGTATAATGAGCTTGACACATTGTGGTTTATGGCAGGTTCACTATTTCAGgtattccttgatcttccaagcatatttccttcaaggattggctatttcgttaacttattctatttctcacagttattattgttttgcag

upper sequence: GLYMA19G22520.2 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G047695_T01 (Zea mays), 5'ss of exon 4
GATGAAGTTATTCAAAGGGAAGAAGCAATAAGAAAAGAGTATAATGAACTTGACACAGTCTGGTTTATGGCAGGTTCTCTATTTCAGgtaataaa-atttccccgaacaagttcagtagttatg-tacattttgagatttagtgcttacattatttgcataaatata---atgcag
||||||||| ||   || || || |||||||| | |||||||||||| ||||||||| | ||||||||||||||||| |||||||||||| |      |    | | ||  ||   |   || | |    | |   ||  | || |    ||  |  ||   || |     | |||
GATGAAGTTGTTGCTAGAGATGAGGCAATAAGGAGAGAGTATAATGAGCTTGACACATTGTGGTTTATGGCAGGTTCACTATTTCAGgtattccttgatctttcaagcatattttctttctaggattggctatatcatcaactgatcctctttctcacagcgatttttgttttcag

upper sequence: GLYMA19G22520.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv14s0171g00310.t01 (Vitis vinifera), 5'ss of exon 4
GATGAAGTTATTCAAAGGGAAGAAGCAATAAGAAAAGAGTATAATGAACTTGACACAGTCTGGTTTATGGCAGGTTCTCTATTTCAGgtaata-----aaatttccccgaacaagttcagtagttatgtacattttgagatttagtgcttacattatttgcataaatataatgcag-----------------------------------------------------------------------------------
| ||||||| || ||||||  |||| ||| | ||  || |||||||| ||||| || |||||||||||||| || ||||| |||||||| ||      | |  ||        |    ||    ||| | | ||      ||      ||| ||   ||||       || ||                                                                                      
GCTGAAGTTCTTGAAAGGGCGGAAGGAATTAAAAGGGAATATAATGAGCTTGATACTGTCTGGTTTATGGCTGGATCTCTGTTTCAGgtcattctcttacacatctgttgttgaaactagataatatatgccttccccttttgttaatttaaatatattgctgtttcctattgggagattctttgattacattgttcttttaggtgatttgttaaatgtagatgaatgtgactatgattttcttaatttctttttgcag

upper sequence: GLYMA19G22520.2 (Glycine max), 5'ss of exon 4
lower sequence: PP1S55_141V6.1 (Physcomitrella patens), 5'ss of exon 4
GATGAAGTTATTCAAAGGGAAGAAGCAATAAGAAAAGAGTATAATGAACTTGACACAGTCTGGTTTATGGCAGGTTCTCTATTTCAGgtaataaaatttccccgaacaagttcagtagttatgtacattttgagatttagtgcttacattatttgcataaatataa--tgcag---------------------------------------
|| |  ||| |  | |||   |  |  || | |   || ||  | || ||||||||||| ||||||||||| |||||| ||||| ||||| |   ||  ||   |   | ||  | || || |  |||       |   |   ||| ||     | || | |||||  | | |                                       
GAAGTTGTTTTAGAGAGGTTGGCGGGTATCAAACGGGAATACGAAGAGCTTGACACAGTTTGGTTTATGGCGGGTTCTTTATTTAAGgtattcccatgaccgacatttaattgcg-agataagctcatcccactttcatgaagttatatgcagaggattattataagtttctgatgatttcaggaactttggttgcctgattatgtgaacag

upper sequence: GLYMA19G22520.2 (Glycine max), 5'ss of exon 4
lower sequence: PP1S181_117V6.1 (Physcomitrella patens), 5'ss of exon 4
GATGAAGTTATTCAAAGGGAAGAAGCAATAAGAAAAGAGTATAATGAACTTGACACAGTCTGGTTTATGGCAGGTTCTCTATTTCAGgtaataaaatttccccgaacaagttcagtagttatgtacattttgagatttagtgct--tacattatttgcataaatataatgcag---------------------------------------------------
|| | |||  |  | ||    | ||  || | |   || ||  | |||||||||||||| ||||||||||| |||||| ||||  |||||||   | | ||      |  ||  |   | | |   |     |  ||   |  |  |    ||||||||  |  || | |  |                                                   
GAGGTAGTGTTAGAGAGATTGGCAGGTATCAAACGGGAATACGAAGAACTTGACACAGTGTGGTTTATGGCGGGTTCTTTATTCAAGgtaattccactgccgactttacattatgagatgaagctgaagagtatgttccatcttggtgagatatttgca-gaggattacggggagaagtttgctgatgattcttcaaacattggttgcctggttatttaaacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15287126|gb|BI471017.1|BI471017
EST:     AGTATAATGAACTTGACACAGTCTGGTTTATGGCAGGTTCTCTATTTCAG                         CAATATCCATATGACATTCCTACTGAGGCCTTTTCATTTGAGATTTTCAAA
genomic: AGTATAATGAACTTGACACAGTCTGGTTTATGGCAGGTTCTCTATTTCAGgtaataaaat ... tataatgcagCAATATCCATATGACATTCCTACTGAGGCCTTTTCATTTGAGATTTTCAAA
EST: gi|197661912|gb|FD480321.1|FD480321
EST:     CTTGACACAGTCTGGTTTATGGCAGGTTCTCTATTTCAG                         CAATATCCATATGACATTCCTACTGAGGCCTTTTCATTTGAGATTTTCAAA
genomic: CTTGACACAGTCTGGTTTATGGCAGGTTCTCTATTTCAGgtaataaaat ... tataatgcagCAATATCCATATGACATTCCTACTGAGGCCTTTTCATTTGAGATTTTCAAA
EST: gi|20815055|gb|BQ299533.1|BQ299533
EST:     AGTATAATGAACTTGACACAGTCTGGTTTATGGCAGGTTCTCTATTTCAG                         CAATATCCATATGACATTCCTACCGAGGCCTTTTCATTTGAGATTTTCAAA
genomic: AGTATAATGAACTTGACACAGTCTGGTTTATGGCAGGTTCTCTATTTCAGgtaataaaat ... tataatgcagCAATATCCATATGACATTCCTACTGAGGCCTTTTCATTTGAGATTTTCAAA
EST: gi|19348475|gb|BM893007.1|BM893007
EST:     AGTATAATGAACTTGACACAGTCTGGTTTATGGCAGGTTCTCTATTTCAG                         CAATATCCATATGACATTCCTACTGAGGCCTTTTCATTTGAGATTTTCAAA
genomic: AGTATAATGAACTTGACACAGTCTGGTTTATGGCAGGTTCTCTATTTCAGgtaataaaat ... tataatgcagCAATATCCATATGACATTCCTACTGAGGCCTTTTCATTTGAGATTTTCAAA
EST: gi|17153028|gb|BM142961.1|BM142961
EST:     AGTATAATGAACTTGACACAGTCTGGTTTATGGCAGGTTCTCTATTTCAG                         CAATATCCATATGACATTCCTACCGAGGCCTTTTCATTTGAGATTTTCAAA
genomic: AGTATAATGAACTTGACACAGTCTGGTTTATGGCAGGTTCTCTATTTCAGgtaataaaat ... tataatgcagCAATATCCATATGACATTCCTACTGAGGCCTTTTCATTTGAGATTTTCAAA
EST: gi|19348347|gb|BM892879.1|BM892879
EST:     AGTATAATGAACTTGACACAGTCTGGTTTATGGCAGGTTCTCTATTTCAG                         CAATATCCATATGACATTCCTACTGAGGCCTTTTCATTTGAGATTTTCAAA
genomic: AGTATAATGAACTTGACACAGTCTGGTTTATGGCAGGTTCTCTATTTCAGgtaataaaat ... tataatgcagCAATATCCATATGACATTCCTACTGAGGCCTTTTCATTTGAGATTTTCAAA
EST: gi|26058132|gb|CA801046.1|CA801046
EST:     AGTATAATGAACTTGACACAGTCTGGTTTATGGCAGGTTCTCTATTTCAG                         CAATATCCATATGACATTCCTACCGAGGCCTTTTCATTTGAGATTTTCAAA
genomic: AGTATAATGAACTTGACACAGTCTGGTTTATGGCAGGTTCTCTATTTCAGgtaataaaat ... tataatgcagCAATATCCATATGACATTCCTACTGAGGCCTTTTCATTTGAGATTTTCAAA
EST: gi|20814963|gb|BQ299441.1|BQ299441
EST:     AGTATAATGAACTTGACACAGTCTGGTTTATGGCAGGTTCTCTATTTCAG                         CAATATCCATATGACATTCCTACCGAGGCCTTTTCATTTGAGATTTTCAAA
genomic: AGTATAATGAACTTGACACAGTCTGGTTTATGGCAGGTTCTCTATTTCAGgtaataaaat ... tataatgcagCAATATCCATATGACATTCCTACTGAGGCCTTTTCATTTGAGATTTTCAAA