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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTATGCTTTGTTGAACCTCCATATTTTCAAATGACTGTCAAACCTATGTTTGCTTGTGGGCTTGATGTGATTGAACTTCCATGCATTGCTGGGTGGCTAgtaagtataccttgattttaggcaaaatctgtgttcattcttatttgctcgtgttgtaagtaatttgtgttgtcttatcttttatcag

Basic information

species Glycine max
transcript GLYMA19G22500.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G22500.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os02g20970.1 (Oryza sativa), 5'ss of exon 6
CGTATGCTTTGTTGAACCTCCATATTTTCAAATGACTGTCAAACCTATGTTTGCTTGTGGGCTTGATGTGATTGAACTTCCATGCATTGCTGGGTGGCTAgtaagtataccttgatt-----ttaggcaaaatctgtgttcattcttatttgc-tcgtgttgtaa-gtaatt-tgtgttgtcttatcttttatcag-------------
 || ||||||||||| |||||||| || || ||||| ||||||||  | |||| |  |||||||||||| | |||||||||| | ||| |||| ||||| |||||| |   |  |||     |  || |   | | | |  | |  | | ||| | |  ||||   | |||| | ||    | ||  |||  |                
AGTGTGCTTTGTTGAGCCTCCATACTTCCAGATGACAGTCAAACCATTATTTGGTCATGGGCTTGATGTAACTGAACTTCCAGGAATTTCTGGATGGCTTgtaagtcttattccattcccattctggtatcttgtatatggaattgtctctgcattgaattgttctgcaattctttgagaacgtacttttggtgttttggatatggcag

upper sequence: GLYMA19G22500.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G156238_T02 (Zea mays), 5'ss of exon 6
CGTATGCTTTGTTGAACCTCCATATTTTCAAATGACTGTCAAACCTATGTTTGCTTGTGGGCTTGATGTGATTGAACTTCCATGCATTGCTGGGTGGCTAgtaagtataccttgattttaggcaaaatctgtg---ttcattctt--------atttgctcgt-gttgtaagtaatttgtgt-------tgtcttatcttttatcag-----------
 |||||||||||||| |||||||| || |||||||| || |||||  |||||| |  ||| |||||||| | |||||| ||| | ||| |||| ||||| ||||||  | ||  ||||     |   | |  |   |||||| ||        |||||   ||  ||  || |   ||| ||       |  ||||| |||| | |            
AGTATGCTTTGTTGAGCCTCCATACTTCCAAATGACAGTGAAACCGCTGTTTGGTCATGGACTTGATGTAACTGAACTCCCAGGAATTTCTGGATGGCTTgtaagtccatct-aatttagtttattgtttccgtctttcatttttttaattacatttgaatgtcattacaattttcttgggtactcagtttccttattttttttaaaaaaaaattcag