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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGCTTCCAAAGTATAATGTCACTGCCACGTTGCAGgtgtgtgttcttttgctgaaatttgattgaattggagccatggctattttggttcttttgttgttgatgggatggttgcatcctgcaatgtattatctcag

Basic information

species Glycine max
transcript GLYMA19G18330.2
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298178349|gb|HO024084.1|HO024084
EST:     GATGCTTCCAAAGTATAATGTCACTGCCACGTTGCAG                         TGTGCAGGTAATCGAAGGACTGCTATGAGCAAGACCAAAACAGTGAAGGGA
genomic: GATGCTTCCAAAGTATAATGTCACTGCCACGTTGCAGgtgtgtgttc ... attatctcagTGTGCAGGTAATCGAAGGACTGCTATGAGCAAGACCAAAACAGTGAAGGGA
EST: gi|213598745|gb|DB964283.1|DB964283
EST:     GATGCTTCCAAAGTATAATGTCACTGCCACGTTGCAG                         TGTGCAGGTAATCGAAGGACTGCTATGAGCAAGACCAAAACAGTGAAGGGA
genomic: GATGCTTCCAAAGTATAATGTCACTGCCACGTTGCAGgtgtgtgttc ... attatctcagTGTGCAGGTAATCGAAGGACTGCTATGAGCAAGACCAAAACAGTGAAGGGA
EST: gi|213608978|gb|DB962904.1|DB962904
EST:     GATGCTTCCAAAGTATAATGTCACTGCCACGTTGCAG                         TGTGCAGGTAATCGAAGGACTGCTATGAGCAAGACCAAAACAGTGAAGGGA
genomic: GATGCTTCCAAAGTATAATGTCACTGCCACGTTGCAGgtgtgtgttc ... attatctcagTGTGCAGGTAATCGAAGGACTGCTATGAGCAAGACCAAAACAGTGAAGGGA
EST: gi|298188243|gb|HO034936.1|HO034936
EST:     GATGCTTCCAAAGTATAATGTCACTGCCACGTTGCAG                         TGTGCAGGTAATCGAAGGACTGCTATGAGCAAGACCAAAACAGTGAAGGGA
genomic: GATGCTTCCAAAGTATAATGTCACTGCCACGTTGCAGgtgtgtgttc ... attatctcagTGTGCAGGTAATCGAAGGACTGCTATGAGCAAGACCAAAACAGTGAAGGGA
EST: gi|298176731|gb|HO026852.1|HO026852
EST:     GATGCTTCCAAAGTATAATGTCACTGCCACGTTGCGG                         TGTGCAGGTAATCGAAGGACTGCTATGAGCAAGACCAAAACAGCGAAGGGA
genomic: GATGCTTCCAAAGTATAATGTCACTGCCACGTTGCAGgtgtgtgttc ... attatctcagTGTGCAGGTAATCGAAGGACTGCTATGAGCAAGACCAAAACAGTGAAGGGA
EST: gi|208253407|gb|GE051129.1|GE051129
EST:     GCTTCCAAAGTATAATGTCACTGCCACGTTGCAG                         TGTGCAGGTAATCGAAGGACTGCTATGAGCAAGACCAAAACAGTGAAGGGA
genomic: GCTTCCAAAGTATAATGTCACTGCCACGTTGCAGgtgtgtgttc ... attatctcagTGTGCAGGTAATCGAAGGACTGCTATGAGCAAGACCAAAACAGTGAAGGGA
EST: gi|207751442|gb|GD724849.1|GD724849
EST:     GCTTCCAAAGTATAATTGTTCACTGCCACGTTGCAG                         TGTGCAGGTAATCGAAGGACTGCTATGAGCAAGACCAAAACAGTGAAGGGA
genomic: GCTTCCAAAGTATAA-TG-TCACTGCCACGTTGCAGgtgtgtgttc ... attatctcagTGTGCAGGTAATCGAAGGACTGCTATGAGCAAGACCAAAACAGTGAAGGGA
EST: gi|298197210|gb|HO041953.1|HO041953
EST:     GATGCTTCCAAAGTATAATGTCACTGCCACGTTGCAG                         TGTGCAGGTAATCGAAGGACTGCTATGAGCAAGACCAAAACAGTGAAGGGA
genomic: GATGCTTCCAAAGTATAATGTCACTGCCACGTTGCAGgtgtgtgttc ... attatctcagTGTGCAGGTAATCGAAGGACTGCTATGAGCAAGACCAAAACAGTGAAGGGA
EST: gi|208041002|gb|GD843425.1|GD843425
EST:     GATGCTTCCAAAGTATAATGTCACTGCCACGTTGCAG                         TGTGCAGGTAATCGAAGGACTGCTATGAGCAAGACCAAAACAGTGAAGGGA
genomic: GATGCTTCCAAAGTATAATGTCACTGCCACGTTGCAGgtgtgtgttc ... attatctcagTGTGCAGGTAATCGAAGGACTGCTATGAGCAAGACCAAAACAGTGAAGGGA
EST: gi|7924466|gb|AW830492.1|AW830492
EST:     GATGCTTCCAAAGTATAATGTCACTGCCACGTTGCAG                         TGTGCAGGTAATCGAAGGACTGCTATGAGCAAGACCAAAACAGTGAAGGGA
genomic: GATGCTTCCAAAGTATAATGTCACTGCCACGTTGCAGgtgtgtgttc ... attatctcagTGTGCAGGTAATCGAAGGACTGCTATGAGCAAGACCAAAACAGTGAAGGGA
EST: gi|298173910|gb|HO017246.1|HO017246
EST:     GATGCTTCCAAAGTATAATGTCACTGCCACGTTGCAG                         TGTGCATGTAATCGAAGGACTGCTATGAGCAAGACCAAAACAGTGAAGGGA
genomic: GATGCTTCCAAAGTATAATGTCACTGCCACGTTGCAGgtgtgtgttc ... attatctcagTGTGCAGGTAATCGAAGGACTGCTATGAGCAAGACCAAAACAGTGAAGGGA
EST: gi|193550159|gb|FK510192.1|FK510192
EST:     CCAAAGTATAATGTCACTGCCACGTTGCAG                         TGTGCAGGTAATCG-AGGACTGCTATGAGCAAGACCAAAACAGTGAAGGGA
genomic: CCAAAGTATAATGTCACTGCCACGTTGCAGgtgtgtgttc ... attatctcagTGTGCAGGTAATCGAAGGACTGCTATGAGCAAGACCAAAACAGTGAAGGGA
EST: gi|193323318|gb|FK292536.1|FK292536
EST:     GATGCTTCCAAAGTATAATGTCACTGCCACGTTGCAG                         TGTGCAGGTAATCGAAGGACTGCTATGAGCAAGACCAAAACAGTGAAGGGA
genomic: GATGCTTCCAAAGTATAATGTCACTGCCACGTTGCAGgtgtgtgttc ... attatctcagTGTGCAGGTAATCGAAGGACTGCTATGAGCAAGACCAAAACAGTGAAGGGA
EST: gi|298199114|gb|HO042477.1|HO042477
EST:     GATGCTTCCAAAGTATAATGTCACTGCCACGTTGCAG                         TGTGCAGGTAATCGAAGGACTGCTATGAGCAAGACCAAAACAGTGAAGGGA
genomic: GATGCTTCCAAAGTATAATGTCACTGCCACGTTGCAGgtgtgtgttc ... attatctcagTGTGCAGGTAATCGAAGGACTGCTATGAGCAAGACCAAAACAGTGAAGGGA
EST: gi|5752537|gb|AI959824.1|AI959824
EST:     GATGCTTCCAAAGTATAATGTCACTGCCACGTTGCAG                         TGTGCAGGTAATCGAAGGACTGCTATGAGCAAGACCAAAACAGTGAAGGGA
genomic: GATGCTTCCAAAGTATAATGTCACTGCCACGTTGCAGgtgtgtgttc ... attatctcagTGTGCAGGTAATCGAAGGACTGCTATGAGCAAGACCAAAACAGTGAAGGGA
EST: gi|298190369|gb|HO032490.1|HO032490
EST:     GATGCTTCCAAAGTATAATGTCACTGCCACGTTGCAG                         TGTGCAGGTAATCGAAGGACTGCTATGAGCAAGACCAAAACAGTGAAGGGA
genomic: GATGCTTCCAAAGTATAATGTCACTGCCACGTTGCAGgtgtgtgttc ... attatctcagTGTGCAGGTAATCGAAGGACTGCTATGAGCAAGACCAAAACAGTGAAGGGA
EST: gi|209713968|gb|BW681975.1|BW681975
EST:     GATGCTTCCAAAGTATAATGTCACTGCCACGTTGCAG                         TGTGCAGGTAATCGAAGGACTGCTATGAGCAAGACCAAAACAGTGAAGGGA
genomic: GATGCTTCCAAAGTATAATGTCACTGCCACGTTGCAGgtgtgtgttc ... attatctcagTGTGCAGGTAATCGAAGGACTGCTATGAGCAAGACCAAAACAGTGAAGGGA
EST: gi|24205759|gb|BU965012.1|BU965012
EST:     GATGCTTCCAAAGTATAATGTCACTGCCACGTTGCAG                         TGTGCAGGTAATCGAAGGACTGCTATGAGCAAGACCAAAACAGTGAAGGGA
genomic: GATGCTTCCAAAGTATAATGTCACTGCCACGTTGCAGgtgtgtgttc ... attatctcagTGTGCAGGTAATCGAAGGACTGCTATGAGCAAGACCAAAACAGTGAAGGGA
EST: gi|193464155|gb|FK428373.1|FK428373
EST:     GATGCTTCTAAAGTATAATGTCACTGCCACGTTGCAG                         TGTGCAGGTAATCGAAGGACT
genomic: GATGCTTCCAAAGTATAATGTCACTGCCACGTTGCAGgtgtgtgttc ... attatctcagTGTGCAGGTAATCGAAGGACT
EST: gi|207772465|gb|GD743043.1|GD743043
EST:     GATGCTTCCAAAGTATAATGTCACTGCCACGTTGCAG                         TGTGCAGGTAATCGAAGGACTGCTATGAGCAAGACCAAAACAGTGAAGGGA
genomic: GATGCTTCCAAAGTATAATGTCACTGCCACGTTGCAGgtgtgtgttc ... attatctcagTGTGCAGGTAATCGAAGGACTGCTATGAGCAAGACCAAAACAGTGAAGGGA
EST: gi|207833854|gb|GD807645.1|GD807645
EST:     GATGCTTCCAAAGTATAATGTCACTGCCACGTTGCAG                         TGTGCAGGTAATCGAAGGACTGCTATGAGCAAGACCAAAACAGTAGAAAGG
genomic: GATGCTTCCAAAGTATAATGTCACTGCCACGTTGCAGgtgtgtgttc ... attatctcagTGTGCAGGTAATCGAAGGACTGCTATGAGCAAGACCAAAACAGT-GAA-GG
EST: gi|298186425|gb|HO037058.1|HO037058
EST:     GATGCTTCCAAAGTATAATGTCACTGCCACGTTGCAG                         TGTGCAGGTAATCGAAGGACTGCTATGAGCAAGACCAAAACAGTGAAGGGA
genomic: GATGCTTCCAAAGTATAATGTCACTGCCACGTTGCAGgtgtgtgttc ... attatctcagTGTGCAGGTAATCGAAGGACTGCTATGAGCAAGACCAAAACAGTGAAGGGA