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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGGTCAAAATGGAAGGCCCATGCATGATCTCTAGTCTCATTTCTCAGCAACTGGGAATCAACTGTTCTGTTTTAATGGGTGCCAACATAGCAAATGAGgtagtttgaagaaattagagttttaattttatttttcttgtaatttgaattttctgtttattttatatttggttgttgtaattattattagtgtttgtgcag

Basic information

species Glycine max
transcript GLYMA19G07410.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G07410.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv14s0219g00280.t01 (Vitis vinifera), 5'ss of exon 4
GGAGGTCAAAATGGAAGGCCCATGCATGATCTCTAGTCTCATTTCTCAGCAACTGGGAATCAACTGTTCTGTTTTAATGGGTGCCAACATAGCAAATGAGgtagtttgaagaaattagagttttaattttatttttcttgtaatttgaattttctgtttattttatatttggttgttgtaattattattagtgtttgtgcag
||||||||||||||||||||||||||||||||| | ||||||| || |    || |||||||| |||| |||| |||||||||||||||| || ||||||||| ||        ||    |  | | ||  |    | |   |||  |   ||     || |  | |||||    |||  ||                    
GGAGGTCAAAATGGAAGGCCCATGCATGATCTCCACTCTCATTACTGACTTGCTAGGAATCAATTGTTGTGTTCTAATGGGTGCCAACATTGCTAATGAGgtaattccgctttgttcatatgatcaattcctacaccatcccattccacagttggccctactcaacatttgagacttgatatgcag----------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6915459|gb|AW396989.1|AW396989
EST:     AGCTGGGAATCAACTGTTCTGTTTTAATGGGTGCCAACATAGCAAATGAA                         ATAGCTGTGGAGAAGTTTAGTGAAGCAACTGTTGGATACAAGCTCAATAGA
genomic: AACTGGGAATCAACTGTTCTGTTTTAATGGGTGCCAACATAGCAAATGAGgtagtttgaa ... gtttgtgcagATAGCTGTGGAGAAGTTTAGTGAAGCAACTGTTGGATACAGGCTCAATAGA
EST: gi|42722611|gb|CK768510.1|CK768510
EST:     AACTGGGAATCAACTGTTCTGTTTTAATGGGTGCCAACATAGCAAATGAG                         ATAGCTGTGGAGAAGTTTAGTGAAGCAACTGTTGGATACAGGCTCAATAGA
genomic: AACTGGGAATCAACTGTTCTGTTTTAATGGGTGCCAACATAGCAAATGAGgtagtttgaa ... gtttgtgcagATAGCTGTGGAGAAGTTTAGTGAAGCAACTGTTGGATACAGGCTCAATAGA
EST: gi|8284111|gb|BE021670.1|BE021670
EST:     AACTGGGAATCAACTGTTCTGTTTTAATGGGTGCCAACATAGCAAATGAG                         ATAGCTGTGGAGAAGTTTAGTGAAGCAACTGTTGGATACAGGCTCAATAGA
genomic: AACTGGGAATCAACTGTTCTGTTTTAATGGGTGCCAACATAGCAAATGAGgtagtttgaa ... gtttgtgcagATAGCTGTGGAGAAGTTTAGTGAAGCAACTGTTGGATACAGGCTCAATAGA