Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGGCTGTAGTCATCTATGTGCCTTTCAGATTGAGGAAGGCATTCCGCAAGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAGgttgtattttactgcaatgttacttgacttgatatgaaattagttgatctttggttttcttttcaatgtttttccataatgtatttgtttaccctgtcacattaatgtggttatagtgagttcctggatcaactatttgtatcaactgaagattatcaaatgacag

Basic information

species Glycine max
transcript GLYMA19G06730.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G06730.1 (Glycine max), 5'ss of exon 4
lower sequence: AT5G16130.1 (Arabidopsis thaliana), 5'ss of exon 4
CAAGGCTGTAGTCATCTATGTGCCTTTCAGATTGAGGAAGGCATTCCGCAAGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAGgttgtattttactgcaatgttacttgacttgatatgaaattagttgatctttg-gttttcttttcaatgtttttccataatgtatttgtttaccctgtcacattaatgtggttatagtgagttcctggatcaactatttgtatcaactgaagattatcaaatgacag
||| ||||| || || || || || |||||||||||||| || ||||||||||||||||  || || ||||||||| | ||||||||||| ||||| |||||   ||||||   || || | ||    ||  ||      ||    ||  |||   | ||| |   |     |     | | | |||  ||  | |  ||                                                                   
CAAAGCTGTTGTGATTTACGTTCCATTCAGATTGAGGAAAGCTTTCCGCAAGATTCATCCCCGTCTCGTCAGAGAGCTTGAGAAGAAGTTCAGTGGAAAGgta--attttataacattgct-ctgtctttagtaaatgcctaaacaatagttgtactatctctcttacacactctgccattctttttcattttcttcacag------------------------------------------------------------------

upper sequence: GLYMA19G06730.1 (Glycine max), 5'ss of exon 4
lower sequence: PP1S152_7V6.1 (Physcomitrella patens), 5'ss of exon 1
CAAGGCTGTAGTCATCTATGTGCCTTTCAGATTGAGGAAGGCATTCCGCAAGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAGgttgtattttactgcaatgttacttgacttgatatgaaattagttgatctttggttttcttttcaatgtttttccataatgtatttgtttaccctgtcacattaatgtggttatagtgagttcctggatcaactatttgtatcaactgaagattatcaaatgacag
|||||| ||  ||||| ||||||||| | |  || | ||||| ||||  ||||| ||   ||| |||||| ||||||||||||||||||| |||||||||   ||   ||      |||  | ||   |    | |      || | |||     ||   | |   | || ||  ||    | | | |  |   ||| || |  | ||                                                          
CAAGGCCGTCATCATCCATGTGCCTTACCGTCTGCGCAAGGCTTTCCAGAAGATCCACGCTCGTCTTGTCCGAGAGTTGGAGAAGAAGTTCAGTGGGAAG-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192308855|gb|FK002079.1|FK002079
EST:     AGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAG                         GATGTTGTCTTGATTGCCACAAGGAGGATCGTGCGACCGCCAAAGAAAGGC
genomic: AGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAGgttgtatttt ... caaatgacagGATGTTGTCTTGATTGCCACAAGGAGGATCGTGCGACCGCCAAAGAAAGGC
EST: gi|298165602|gb|HO011651.1|HO011651
EST:     AGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAG                         GATGTTGTCTTGATTGCCACAAGGAGGATCGTGCGACCGCCAAAGAAAGGC
genomic: AGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAGgttgtatttt ... caaatgacagGATGTTGTCTTGATTGCCACAAGGAGGATCGTGCGACCGCCAAAGAAAGGC
EST: gi|213608685|gb|DB968972.1|DB968972
EST:     AGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAG                         GATGTTGTCTTGATTGCCACAAGGAGGATCGTGCGACCGCCAAAGAAAGGC
genomic: AGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAGgttgtatttt ... caaatgacagGATGTTGTCTTGATTGCCACAAGGAGGATCGTGCGACCGCCAAAGAAAGGC
EST: gi|15337280|gb|BI497936.1|BI497936
EST:     AGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAG                         GATGTTGTCTTGATTGCCACAAGGAGGATCGTGCGACCGCCAAAGAAAGGC
genomic: AGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAGgttgtatttt ... caaatgacagGATGTTGTCTTGATTGCCACAAGGAGGATCGTGCGACCGCCAAAGAAAGGC
EST: gi|23726793|gb|BU761399.1|BU761399
EST:     AGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAG                         GATGTTGTCTTGATTGCCACAAGGAGGATCGTGCGACCGCCAAAGAAAGGC
genomic: AGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAGgttgtatttt ... caaatgacagGATGTTGTCTTGATTGCCACAAGGAGGATCGTGCGACCGCCAAAGAAAGGC
EST: gi|192326800|gb|FK018552.1|FK018552
EST:     TTGGAGAAGAAGTTTAGTGGGAAG                         GATGTTGTCTTGATTGCCACAAGGAGGATCGTGCGACCGCCAAAGAAAGGC
genomic: TTGGAGAAGAAGTTTAGTGGGAAGgttgtatttt ... caaatgacagGATGTTGTCTTGATTGCCACAAGGAGGATCGTGCGACCGCCAAAGAAAGGC
EST: gi|213600262|gb|DB964342.1|DB964342
EST:     AGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAG                         GATGTTGTCTTGATTGCCACAAGGAGGATCGTGCGACCGCCAAAGAAAGGC
genomic: AGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAGgttgtatttt ... caaatgacagGATGTTGTCTTGATTGCCACAAGGAGGATCGTGCGACCGCCAAAGAAAGGC
EST: gi|151393160|gb|EV263035.1|EV263035
EST:     AGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAG                         GGTGTTGTCTTGATTGCCACAAGGAGGATCGTGCGACCGCCAAAGAAAGGC
genomic: AGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAGgttgtatttt ... caaatgacagGATGTTGTCTTGATTGCCACAAGGAGGATCGTGCGACCGCCAAAGAAAGGC
EST: gi|192302418|gb|FG995902.1|FG995902
EST:     AGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAG                         GATGTTGTCTTGATTGCCACAAGGAGGATCGTGCGACCGCCAAAGAAAGGC
genomic: AGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAGgttgtatttt ... caaatgacagGATGTTGTCTTGATTGCCACAAGGAGGATCGTGCGACCGCCAAAGAAAGGC
EST: gi|151406018|gb|EV275833.1|EV275833
EST:     AGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAG                         GATGTTGTCTTGATTGCCACAAGGAGGATCGTGCGACCGCCAAAGAAAGGC
genomic: AGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAGgttgtatttt ... caaatgacagGATGTTGTCTTGATTGCCACAAGGAGGATCGTGCGACCGCCAAAGAAAGGC
EST: gi|18040430|gb|BM308724.1|BM308724
EST:     AGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAG                         GATGTTGTCTTGATTGCCACAAGGAGGATCGTGCGACCGCCAAAGAAAGGC
genomic: AGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAGgttgtatttt ... caaatgacagGATGTTGTCTTGATTGCCACAAGGAGGATCGTGCGACCGCCAAAGAAAGGC
EST: gi|298183491|gb|HO028704.1|HO028704
EST:     AGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAG                         GATGTTGTCTTGATTGCCACAATGAGGATCGTGCGACCGCCAAAGAAAGGC
genomic: AGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAGgttgtatttt ... caaatgacagGATGTTGTCTTGATTGCCACAAGGAGGATCGTGCGACCGCCAAAGAAAGGC
EST: gi|209721155|gb|BW659181.1|BW659181
EST:     AGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAG                         GATGTTGTCTTGATTG
genomic: AGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAGgttgtatttt ... caaatgacagGATGTTGTCTTGATTG
EST: gi|209702953|gb|BW667461.1|BW667461
EST:     AGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAG                         GATGTTGTCTTGATTGCCACAAGGAGGATCGTGCGACCGCCAAAGAAAGGC
genomic: AGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAGgttgtatttt ... caaatgacagGATGTTGTCTTGATTGCCACAAGGAGGATCGTGCGACCGCCAAAGAAAGGC
EST: gi|192296560|gb|FG989132.1|FG989132
EST:     AGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAG                         GATGTTGTCTTGATTGCCACAAGGAGGATCGTGCGACCGCCAAAGAAAGGC
genomic: AGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAGgttgtatttt ... caaatgacagGATGTTGTCTTGATTGCCACAAGGAGGATCGTGCGACCGCCAAAGAAAGGC
EST: gi|209702508|gb|BW667141.1|BW667141
EST:     AAGAAGTTTAGTGGGAAG                         GATGTTGTCTTGATTGCCACAAGGAGGATCGTGCGACCGCCAAAGAAAGGC
genomic: AAGAAGTTTAGTGGGAAGgttgtatttt ... caaatgacagGATGTTGTCTTGATTGCCACAAGGAGGATCGTGCGACCGCCAAAGAAAGGC
EST: gi|298179561|gb|HO028032.1|HO028032
EST:     AGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAG                         GATGTTGTCTTGATTGCCACAAGGA
genomic: AGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAGgttgtatttt ... caaatgacagGATGTTGTCTTGATTGCCACAAGGA
EST: gi|213597808|gb|DB960365.1|DB960365
EST:     AGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAG                         GATGTTGTCTTGATTGCCACAAGGAGGATCGTGCGACCGCCAAAGAAAGGC
genomic: AGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAGgttgtatttt ... caaatgacagGATGTTGTCTTGATTGCCACAAGGAGGATCGTGCGACCGCCAAAGAAAGGC
EST: gi|151408391|gb|EV278199.1|EV278199
EST:     AGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAG                         GATGTTGTCTTGATTGCCACAAGGAGGATCGTGCGACCGCCAAAGAAAGGC
genomic: AGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAGgttgtatttt ... caaatgacagGATGTTGTCTTGATTGCCACAAGGAGGATCGTGCGACCGCCAAAGAAAGGC
EST: gi|213597844|gb|DB962197.1|DB962197
EST:     AGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAG                         GATGTTGTCTTGATTGCCACAAGGAGGATCGTGCGACCGCCAAAGAAAGGC
genomic: AGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAGgttgtatttt ... caaatgacagGATGTTGTCTTGATTGCCACAAGGAGGATCGTGCGACCGCCAAAGAAAGGC
EST: gi|6719023|gb|AW306670.1|AW306670
EST:     AGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAG                         GATGTTGTCTTGATTGCCACAAGGAGGATCGTGCGACCGCCAAAGAAAGGC
genomic: AGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAGgttgtatttt ... caaatgacagGATGTTGTCTTGATTGCCACAAGGAGGATCGTGCGACCGCCAAAGAAAGGC
EST: gi|209704583|gb|BW656616.1|BW656616
EST:     AGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAG                         GATGTTGTCTTGATTGCCACAAGGAGGATCGTGCGACCGCCAAAGAAAGGC
genomic: AGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAGgttgtatttt ... caaatgacagGATGTTGTCTTGATTGCCACAAGGAGGATCGTGCGACCGCCAAAGAAAGGC
EST: gi|213592415|gb|DB971599.1|DB971599
EST:     AGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAG                         GATGTTGTCTTGATTGCCACAAGGAGGATCGTGCGACCGCCAAAGAAAGGC
genomic: AGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAGgttgtatttt ... caaatgacagGATGTTGTCTTGATTGCCACAAGGAGGATCGTGCGACCGCCAAAGAAAGGC
EST: gi|298173686|gb|HO017022.1|HO017022
EST:     AGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAG                         GATGTTGTCTTGATTGCCACAAGGAGGATCGTGCGACCGCCAAAGAAAGGC
genomic: AGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAGgttgtatttt ... caaatgacagGATGTTGTCTTGATTGCCACAAGGAGGATCGTGCGACCGCCAAAGAAAGGC
EST: gi|21676100|gb|BQ628451.1|BQ628451
EST:     AGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAG                         GATGTTGTCTTGATTGCCACAAGGAGGATCGTGCGACCGCCAAAGAAAGGC
genomic: AGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAGgttgtatttt ... caaatgacagGATGTTGTCTTGATTGCCACAAGGAGGATCGTGCGACCGCCAAAGAAAGGC
EST: gi|58014414|gb|CX701156.1|CX701156
EST:     AGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAG                         GATGTTGTCTTGATTGCCACAAGGAGGATCGTGCGACCGCCAAAGAAAGGC
genomic: AGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAGgttgtatttt ... caaatgacagGATGTTGTCTTGATTGCCACAAGGAGGATCGTGCGACCGCCAAAGAAAGGC
EST: gi|7147149|gb|AW509071.1|AW509071
EST:     AGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAG                         GATGTTGTCTTGATTGCCACAAGGAGGATCGTGCGACCGCCAAAGAAAGGC
genomic: AGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAGgttgtatttt ... caaatgacagGATGTTGTCTTGATTGCCACAAGGAGGATCGTGCGACCGCCAAAGAAAGGC
EST: gi|16346842|gb|BI972437.1|BI972437
EST:     AGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAG                         GATGTTGTCTTGATTGCCACAAGGAGGATCGTGCGACCGCCAAAGAAAGGC
genomic: AGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAGgttgtatttt ... caaatgacagGATGTTGTCTTGATTGCCACAAGGAGGATCGTGCGACCGCCAAAGAAAGGC
EST: gi|213601218|gb|DB956512.1|DB956512
EST:     AGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAG                         GATGTTGTCTTGATTGCCACAAGGAGGATCGTGCGACCGCCAAAGAAAGGC
genomic: AGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAGgttgtatttt ... caaatgacagGATGTTGTCTTGATTGCCACAAGGAGGATCGTGCGACCGCCAAAGAAAGGC
EST: gi|209702507|gb|BW667140.1|BW667140
EST:     AGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAG                         GATGTTGTCTTGATTGCCACAAGGAGGATCGTGCGACCGCCAAAGAAAGGC
genomic: AGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAGgttgtatttt ... caaatgacagGATGTTGTCTTGATTGCCACAAGGAGGATCGTGCGACCGCCAAAGAAAGGC
EST: gi|9986818|gb|BE660926.1|BE660926
EST:     AGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAG                         GATGTTGTCTTGATTGCCACAAGGAGGATCGTGCGACCGCCAAAGAAAGGC
genomic: AGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAGgttgtatttt ... caaatgacagGATGTTGTCTTGATTGCCACAAGGAGGATCGTGCGACCGCCAAAGAAAGGC
EST: gi|42723067|gb|CK768966.1|CK768966
EST:     AGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAG                         GATGTTGTCTTGATTGCCACAAGGAGGATCGTGCGACCGCCAAAGAAAGGC
genomic: AGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAGgttgtatttt ... caaatgacagGATGTTGTCTTGATTGCCACAAGGAGGATCGTGCGACCGCCAAAGAAAGGC
EST: gi|298169246|gb|HO020606.1|HO020606
EST:     AGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAG                         GATGTTGTCTTGATTGCCACAAGGAGGACCGTGCGACCGCCAAAGAAAGGC
genomic: AGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAGgttgtatttt ... caaatgacagGATGTTGTCTTGATTGCCACAAGGAGGATCGTGCGACCGCCAAAGAAAGGC
EST: gi|254325477|gb|GR838358.1|GR838358
EST:     AGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAG                         GATGTTGTCTTGATTGCCACAAGGAGGATCGTGCGACCGCCAAAGAAAGGC
genomic: AGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAGgttgtatttt ... caaatgacagGATGTTGTCTTGATTGCCACAAGGAGGATCGTGCGACCGCCAAAGAAAGGC
EST: gi|7145885|gb|AW507807.1|AW507807
EST:     AGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAG                         GATGTTGTCTTGATTGCCACAAGGAGGATCGTGCGACCGCCAAAGAAAGGC
genomic: AGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAGgttgtatttt ... caaatgacagGATGTTGTCTTGATTGCCACAAGGAGGATCGTGCGACCGCCAAAGAAAGGC
EST: gi|192302419|gb|FG995903.1|FG995903
EST:     AGATTCATTTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAG                         GATGTTGTCTTGATTGCCACAAGGAGGATCGTGCGACCGCCAAAGAAAGGC
genomic: AGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAGgttgtatttt ... caaatgacagGATGTTGTCTTGATTGCCACAAGGAGGATCGTGCGACCGCCAAAGAAAGGC
EST: gi|4285038|gb|AI440856.1|AI440856
EST:     AGATTCATC-TCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAG                         GATGTTGTCTTGATTGCCACAAGNAGGATCGTGCGACCGCCAAAGAAAGGC
genomic: AGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAGgttgtatttt ... caaatgacagGATGTTGTCTTGATTGCCACAAGGAGGATCGTGCGACCGCCAAAGAAAGGC
EST: gi|298181684|gb|HO025859.1|HO025859
EST:     AGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAG                         GATGTTGTCTTGATTGCCACAAGGAGGATCGTGCGACCGCCAAAGAAAGGC
genomic: AGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAGgttgtatttt ... caaatgacagGATGTTGTCTTGATTGCCACAAGGAGGATCGTGCGACCGCCAAAGAAAGGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAAGGCTGTAGTCATCTATGTGCCTTTCAGATTGAGGAAGGCATTCCGCAAGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAGgttgtattttactgcaatgttacttgacttgatatgaaattagttgatctttggttttcttttcaatgtttttccataatgtatttgtttaccctgtcacattaatgtggttatagtgagttcctggatcaactatttgtatcaactgaagattatcaaatgacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGT