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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTCAGTGATACCAATCCATATAAATTTGCCTCAAAATTGCAGGCTAGAAGTCCAAAGTATATATCTTTACTCAACCATCTCCGCATTTACATACCCGAGgtaagttggattcaacaattatactctttctgtcttctttctatgttggtcagaatatttgtctgtaagttctgcatttcaagctcataaaagcttctta...

Basic information

species Glycine max
transcript GLYMA19G03460.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G03460.1 (Glycine max), 5'ss of exon 4
lower sequence: AT5G15470.1 (Arabidopsis thaliana), 5'ss of exon 4
TCTCAGTGATACCAATCCATATAAATTTGCCTCAAAATTGCAGGCTAGAAGTCCAAAGTATATATCTTTACTCAACCATCTCCGCATTTACATACCCGAGgtaagttggattcaacaattatactctttctgtcttctttctatgttggtcagaatatttgtctgtaagttctgcatttcaagctcataaaagcttctta
 ||||  || || | |||    | |||||| |||||||||||| ||||||||||||| || |||||||| |||||||||||  | || || ||||| ||||||| |     ||  | | | |   ||| |  |     |  |  |      | |  ||||| |  |    |||   |||   |   |             
CCTCACCGAAACAACTCCTCGAACATTTGCTTCAAAATTGCAGTCTAGAAGTCCAAAATACATATCTTTGCTCAACCATCTTAGAATATATATACCAGAGgtaaatctttatcccctagtttgaacttgcaatagaactcatggggattctaaatcatttgccaatttcgtctctttttttggaatag------------

upper sequence: GLYMA19G03460.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv14s0108g01520.t01 (Vitis vinifera), 5'ss of exon 4
TCTCAGTGATACCAATCCATATAAATTTGCCTCAAAATTGCAGGCTAGAAGTCCAAAGTATATATCTTTACTCAACCATCTCCGCATTTACATACCCGAGgtaagttggattcaacaattatactctttctgtcttctttctatgttggtcagaatatttgtctgtaagttctgcatttcaagctcataaaagcttctta--------
||||||||| || | ||||   | |||||| || |||||||||||||||||||| ||||| || || || ||||||||||||||||| || ||||| |||||||  ||   |       |||| |  | |      |||  | ||| | || ||| | |    |  ||| | |   ||   |  |   |||   ||  ||        
TCTCAGTGAGACTACTCCACGAAGATTTGCTTCGAAATTGCAGGCTAGAAGTCCTAAGTACATTTCCTTGCTCAACCATCTCCGCATATATATACCAGAGgtaatctgatgtggtttgatatatttctcca-----cttattgtgtagatctgaaaact---ataaaagcttttggttaatatatacaaaatatttggtattagaggt