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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGGGCTTGCCCAAGATGCTCCAGTGGGAGATAAAACTCATGTTTCCACTGAAGTAATGGGAACACAAGGCTATGCAGCCCCTGAGTATGTGATGACGGgttagtatgctctcaaacatctcattttgttcaaccaaatgttactattcatgtgtagcatacaatcacaagctttatgaaaatacctagctagttaggg...

Basic information

species Glycine max
transcript GLYMA19G02730.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G02730.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os09g19700.1 (Oryza sativa), 5'ss of exon 5
TTTGGGCTTGCCCAAGATGCTCCAGTGGGAGATAAAACTCATGTTTCCACTGAAGTAATGGGAACACAAGGCTATGCAGCCCCTGAGTATGTGATGACGGgttagtatgctctcaaacatctcattttgttcaaccaaatgttactattcatgtgtagcatacaatcacaagctttatgaaaatacctagctagttaggg--
|||||||||||| ||||||  || || || || |||||||| || || |||  ||||||||||||| | || |||||||| || |||||||| ||||| ||| |||      |||  |||| |     ||| |    |  |    ||  |  | |  | |    |  | ||          ||   |     | | |     
TTTGGGCTTGCCAAAGATGGCCCTGTAGGTGACAAAACTCACGTGTCTACTCGAGTAATGGGAACATATGGTTATGCAGCTCCGGAGTATGTTATGACAGgtaagtgcttcatcagtcatcac-cagggttgacgttaccgccggtaaccgcggg-ggtacggtaatataaataccgcagtaacctccttaaattcaaataa

upper sequence: GLYMA19G02730.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G132184_T03 (Zea mays), 5'ss of exon 5
TTTGGGCTTGCCCAAGATGCTCCAGTGGGAGATAAAACTCATGTTTCCACTGAAGTAATGGGAACACAAGGCTATGCAGCCCCTGAGTATGTGATGACGGgttagtatgctctcaaacatctcat---tttgttcaaccaaat--gttactattcatgtgtagcatacaatcacaagctttatgaaaatacctagctagttaggg
|||||||||||  |||| |  || || || ||||||||||||||||| |||  ||||||||||||  | || |||||||| || || ||||| ||||| ||| |||||  | ||| |  |  |||   | ||| || | || |  | |  |   || || | ||  ||   ||   |||    |  |  | | | | | | |   
TTTGGGCTTGCGAAAGACGGACCTGTAGGTGATAAAACTCATGTTTCTACTCGAGTAATGGGAACCTATGGATATGCAGCACCAGAATATGTCATGACTGgtaagtatcttgtcatatttgccatgactgtgtccatcgaactctggtggtgagcaagtctggc-cactgcca-gtgctaccagtgagcaacgaaccattca---

upper sequence: GLYMA19G02730.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv14s0108g00380.t01 (Vitis vinifera), 5'ss of exon 5
TTTGGGCTTGCCCAAGATGCTCCAGTGGGAGATAAAACTCATGTTTCCACTGAAGTAATGGGAACACAAGGCTATGCAGCCCCTGAGTATGTGATGACGGgttagtatgctctcaaacatctcatt-ttgttcaaccaaatgttactattcatgtgtagcatacaatcacaagctttatgaaaatac-ctagctagttaggg--
||||| |||||| |||| | |||||  |||||||| || ||||| || |||   |||||||| ||  | ||||||||||||||||||||||||||||| ||| | ||  ||   |||| |||||||  | ||      | | ||   |||  ||||    || |  |    | |  | | |   | | |   ||||||  |   
TTTGGACTTGCCAAAGACGGTCCAGAAGGAGATAAGACACATGTATCTACTCGTGTAATGGGCACCTATGGCTATGCAGCCCCTGAGTATGTGATGACAGgtgactacactt--aaac-tctcattactatttttattatttttgacatttctgtg-gctatgctcttgtgacccatctaattctgctcctcctagttttgcca

upper sequence: GLYMA19G02730.1 (Glycine max), 5'ss of exon 4
lower sequence: PP1S207_2V6.1 (Physcomitrella patens), 5'ss of exon 5
TTTGGGCTTGCCCAAGATGCTCCAGTGGGAGATAAAACTCATGTTTCCACTGAAGTAATGGGAACACAAGGCTATGCAGCCCCTGAGTATGTGATGACGGgttagtatgctctcaaacatctcattttgttcaaccaaatgttactatt-catgtgtagcata-caatcacaagctttatgaaaatacctagctagttaggg
|| ||||| ||  ||||||  || |  ||||| |||||||| ||||| ||    || ||||| ||  | |||||||| |||||||||||||||||||| |||  ||   |||||   ||    ||  |||  |  |  |   | ||||  | | | |  || | || |       |||| | |    | ||  |    | | 
TTCGGGCTAGCGAAAGATGGACCTGAAGGAGACAAAACTCACGTTTCAACACGTGTTATGGGCACCTATGGCTATGCTGCCCCTGAGTATGTGATGACTGgt--gtgaactctcccccactctatcatgtctactctgaaaatgctatgacgtcttttccagatcacttttcttttttacgtatgatcataaattcaaatga