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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAGCATGCGCAGTTCTAGATGTGCTTGGTCCTCCATATTCTGATGCTGAAGGCAGACACTGCACATACTACCACGATTTCCCCTTTTCCAACTTTTCAGgtatcttgccactaatccatgcaggcttgtaataaatgatctcattttttcaaaacaagctgaactaaacatgcactaaaaccaattgttactttttggaccttttttgttatagtttaataatgatttctgttagctaatggggtgcatatttttttggaatttcag

Basic information

species Glycine max
transcript GLYMA19G02430.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G02430.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv14s0108g00090.t01 (Vitis vinifera), 5'ss of exon 4
ACAGCATGCGCAGTTCTAGATGTGCTTGGTCCTCCATATTCTGATGCTGAAGGCAGACACTGCACATACTACCACGATTTCCCCTTTTCCAACTTTTCAGgtatcttgccactaatccatgcaggcttgtaataaatgatctcattttttcaaaacaagctgaactaaacatgcactaaaaccaattgttactttttggaccttttttgttatagtttaataatgatttctgttagctaatggggtgcatatttttttggaatttcag
|||||||||||||| ||||||||||| || || || || |||||| |||||||| |  | |||||||| |||   || ||||| ||  |||| || |||||||   || |    |||     |||        ||||| |      | || ||||| |  |      ||  ||  ||||   |||| |||  | ||    | ||||  | |   |                                                     
ACAGCATGCGCAGTGCTAGATGTGCTAGGCCCACCGTACTCTGATCCTGAAGGCCGGGATTGCACATATTACTTTGACTTCCCTTTCACCAATTTCTCAGgtacaatgtct---atcagaaaagg------gaaaatgctggtgaatatttaaaacgattt---tccaatttggtctaa--tcaat-gttcatcttcatcctttttgaggttccg-----------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192320465|gb|FK012323.1|FK012323
EST:     AGGCAGACACTGCACATACTACCTCGATTTCCCCTTTTCCAACTTTTCAG                         TGGATGGATTATCCATACCAGAAGAGGAAAAGAATGCTTATGAATGGCTAC
genomic: AGGCAGACACTGCACATACTACCACGATTTCCCCTTTTCCAACTTTTCAGgtatcttgcc ... ggaatttcagTGGATGGATTATCCATACCAGAAGAGGAAAAGAATGCTTATGAATGGCTAC
EST: gi|254341534|gb|GR852671.1|GR852671
EST:     AGGCAGACACTGCACATACTACCACGATTTCCCCTTTTCCAACTTTTCAG                         TGGATGGATTATCCATACCAGAAGAGGAAAAGAATGCTTATGAATGGCTAC
genomic: AGGCAGACACTGCACATACTACCACGATTTCCCCTTTTCCAACTTTTCAGgtatcttgcc ... ggaatttcagTGGATGGATTATCCATACCAGAAGAGGAAAAGAATGCTTATGAATGGCTAC
EST: gi|192328382|gb|FK020093.1|FK020093
EST:     AGGCAGACACTGCACATACTACCACGATTTCCCCTTTTCCAACTTTTCAG                         TGGATGGATTATCCATACCAGAAGAGGAAAAGAATGCTTATGAATGGCTAC
genomic: AGGCAGACACTGCACATACTACCACGATTTCCCCTTTTCCAACTTTTCAGgtatcttgcc ... ggaatttcagTGGATGGATTATCCATACCAGAAGAGGAAAAGAATGCTTATGAATGGCTAC
EST: gi|298194116|gb|HO040764.1|HO040764
EST:     AGGCAGACACTGCACATACTACCACGATTTCCCCTTTTCCAACTTTTCAG                         TGGATGGATTATCCATACCAGAAGAGGAAAAGAATGCTTATGAATGGCTAC
genomic: AGGCAGACACTGCACATACTACCACGATTTCCCCTTTTCCAACTTTTCAGgtatcttgcc ... ggaatttcagTGGATGGATTATCCATACCAGAAGAGGAAAAGAATGCTTATGAATGGCTAC
EST: gi|6913433|gb|AW394963.1|AW394963
EST:     AGGCAGACACTGCACATACTACCACGATTTCCCCTTTTCCAACTTTTCAG                         TGGATGGATTATCCATACCAGAAGAGGAAAAGAATGCTTATGAATGGCTAC
genomic: AGGCAGACACTGCACATACTACCACGATTTCCCCTTTTCCAACTTTTCAGgtatcttgcc ... ggaatttcagTGGATGGATTATCCATACCAGAAGAGGAAAAGAATGCTTATGAATGGCTAC
EST: gi|13789602|gb|BG652193.1|BG652193
EST:     AGGCAGACACTGCACATACTACCACGATTTCCCCTTTTCCAACTTTTCAG                         TGGATGGATTATCCATACCAGAAGAGGAAAAGAATGCTTATGAATGGCTAC
genomic: AGGCAGACACTGCACATACTACCACGATTTCCCCTTTTCCAACTTTTCAGgtatcttgcc ... ggaatttcagTGGATGGATTATCCATACCAGAAGAGGAAAAGAATGCTTATGAATGGCTAC
EST: gi|162286139|gb|FC456641.1|FC456641
EST:     AGGCAGACACTGCACATACTACCACGATTTCCCCTTTTCCAACTTTTCAG                         TGGATGGATTATCCATACCAGAAGAGGAAAAGAATGCTTATGAATGGCTAC
genomic: AGGCAGACACTGCACATACTACCACGATTTCCCCTTTTCCAACTTTTCAGgtatcttgcc ... ggaatttcagTGGATGGATTATCCATACCAGAAGAGGAAAAGAATGCTTATGAATGGCTAC