Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTAAGTGCAAGAAAGGTGTCTTGATTGTTAACAATGCTCGAGGGGCAATTGCGGACACTCAAGCAATTGCTGATGCTTGCTCCAGTGGCCACGTTGCAGgtaattctaaaaccaggtgacaaaaatgtttgtgcttccagcagcaaaacaagaaattattattgaactaatgtagtaataccgtaattttgttaagata...

Basic information

species Glycine max
transcript GLYMA19G01210.4
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G01210.4 (Glycine max), 5'ss of exon 4
lower sequence: Vv14s0066g01320.t01 (Vitis vinifera), 5'ss of exon 4
GCTAAGTGCAAGAAAGGTGTCTTGATTGTTAACAATGCTCGAGGGGCAATTGCGGACACTCAAGCAATTGCTGATGCTTGCTCCAGTGGCCACGTTGCAGgtaattctaaaaccaggtgacaaaaatgtttgtgcttccagcagcaaaacaagaaattattattgaactaatgtagtaataccgtaattttgttaagata-------------
|| ||||  || || || ||  | |||||||||||||||||||| |||||   ||| || |||||  |||| ||||| ||||||||||| ||  |||||||||||  |     |||        | | | |  | ||  || |          |  ||  | || |   | | | | ||  |  | | ||  ||   ||              
GCAAAGTTGAAAAAGGGAGTTCTAATTGTTAACAATGCTCGAGGAGCAATCATGGATACACAAGCTGTTGCCGATGCATGCTCCAGTGGGCATATTGCAGgtaatgtt----tcagcacttttgagtttcttggatttgagta-tgttgttcaatgtttctttttatgcagttttgaaagccaatgacttcattttaattttctgattttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5687873|gb|AI940852.1|AI940852
EST:     TGCGGACACTCAAGCAATTGCTGATGCTTGCTCCAGTGGCCACGTTGCAG                         GTTATAGTGGTGATGTTTGGTTCCCACAACCAGCTCCAAAGGATCATCCAT
genomic: TGCGGACACTCAAGCAATTGCTGATGCTTGCTCCAGTGGCCACGTTGCAGgtaattctaa ... atttctatagGTTATAGTGGTGATGTTTGGTTCCCACAACCAGCTCCAAAGGATCATCCAT
EST: gi|42722748|gb|CK768647.1|CK768647
EST:     TGCGGACACTCAAGCAATTGCTGATGCTTGCTCCAGTGGCCACGTTGCAG                         GTTATAGTGGTGATGTTTGGTTCCCACAACCAGCT
genomic: TGCGGACACTCAAGCAATTGCTGATGCTTGCTCCAGTGGCCACGTTGCAGgtaattctaa ... atttctatagGTTATAGTGGTGATGTTTGGTTCCCACAACCAGCT
EST: gi|254342880|gb|GR859042.1|GR859042
EST:     TGCGGACACTCAAGCAATTGCTGATGCTTGCTCCAGTGGCCACGTTGCAG                         GTTATAGTGGTGATGTTTGGTTCCCACAACCAGCTCCAAAGGATCATCCAT
genomic: TGCGGACACTCAAGCAATTGCTGATGCTTGCTCCAGTGGCCACGTTGCAGgtaattctaa ... atttctatagGTTATAGTGGTGATGTTTGGTTCCCACAACCAGCTCCAAAGGATCATCCAT
EST: gi|8285757|gb|BE023316.1|BE023316
EST:     CGGACACTCAAGCAATTGCTGATGCTTGCTCCAGTTGGCC-CGTTGGAAG                         GT-ATAGTGGTGATGTTGGGTTCCCACA
genomic: CGGACACTCAAGCAATTGCTGATGCTTGCTCCAGT-GGCCACGTTGCA-Ggtaattctaa ... atttctatagGTTATAGTGGTGATGTTTGGTTCCCACA
EST: gi|31463969|gb|CD405997.1|CD405997
EST:     GCAATTGCTGATGCTTGCTCCAGTGGCCACGTTGCAG                         GTTATAGTGGTGATGTTTGGTTCCCACAACCAGCTCCAAAGGATCATCCAT
genomic: GCAATTGCTGATGCTTGCTCCAGTGGCCACGTTGCAGgtaattctaa ... atttctatagGTTATAGTGGTGATGTTTGGTTCCCACAACCAGCTCCAAAGGATCATCCAT
EST: gi|15664582|gb|BI701953.1|BI701953
EST:     TGCGGACACTCAAGCAATTGCTGATGCTTGCTCCAGTGGCCACGTTGCAG                         GTTATAGTGGTGATGTTTGGTTCCCACAACCAGCTCCAAAGGATCATCCAT
genomic: TGCGGACACTCAAGCAATTGCTGATGCTTGCTCCAGTGGCCACGTTGCAGgtaattctaa ... atttctatagGTTATAGTGGTGATGTTTGGTTCCCACAACCAGCTCCAAAGGATCATCCAT
EST: gi|11689652|gb|BF597328.1|BF597328
EST:     TGCGGACACTCAAGCAATTGCTGATGCTTGCTCCAGTGGCCACGTTGCAG                         GTTATAGTGGTGATGTTTGGTTCCCACAACCAGCTCCAAAGGATCATCCAT
genomic: TGCGGACACTCAAGCAATTGCTGATGCTTGCTCCAGTGGCCACGTTGCAGgtaattctaa ... atttctatagGTTATAGTGGTGATGTTTGGTTCCCACAACCAGCTCCAAAGGATCATCCAT
EST: gi|254340370|gb|GR858495.1|GR858495
EST:     TGCGGACACTCAAGCAATTGCTGATGCTTGCTCCAGTGGCCACGTTGCAG                         GTTATAGTGGTGATGTTTGGTTCCCACAACCAGCTCCAAAGGATCATCCAT
genomic: TGCGGACACTCAAGCAATTGCTGATGCTTGCTCCAGTGGCCACGTTGCAGgtaattctaa ... atttctatagGTTATAGTGGTGATGTTTGGTTCCCACAACCAGCTCCAAAGGATCATCCAT
EST: gi|6667256|gb|AW278707.1|AW278707
EST:     AGCGGACACTCAAGCAATTGCTGATGCTTGCTCCAGTGGCCACGTTGCAC                         GTTATAGTGGTGATGTTTGGTTCCCACAACCAGCTCCAAAGGATCATCCAT
genomic: TGCGGACACTCAAGCAATTGCTGATGCTTGCTCCAGTGGCCACGTTGCAGgtaattctaa ... atttctatagGTTATAGTGGTGATGTTTGGTTCCCACAACCAGCTCCAAAGGATCATCCAT
EST: gi|10255348|gb|BE823114.1|BE823114
EST:     TGCGGACACTCAAGCAATTGCTGATGCTTGCTCCAGTGGCCACGTTGCAG                         GTTATAGTGGTGATGTTTGGTTCCCACAACCAGCTCCAAAGGATCATCCAT
genomic: TGCGGACACTCAAGCAATTGCTGATGCTTGCTCCAGTGGCCACGTTGCAGgtaattctaa ... atttctatagGTTATAGTGGTGATGTTTGGTTCCCACAACCAGCTCCAAAGGATCATCCAT
EST: gi|15201822|gb|BI425077.1|BI425077
EST:     TGCGGACACTCAAGCAATTGCTGATGCTTGCTCCAGTGGCCACGTTGCAG                         GTTATAGTGGTGATGTTTGGTTCCCACAACCAGCTCCAAAGGATCATCCAT
genomic: TGCGGACACTCAAGCAATTGCTGATGCTTGCTCCAGTGGCCACGTTGCAGgtaattctaa ... atttctatagGTTATAGTGGTGATGTTTGGTTCCCACAACCAGCTCCAAAGGATCATCCAT
EST: gi|7232694|gb|AW568048.1|AW568048
EST:     TGCGGACACTCAAGCAATTGCTGATGCTTGCTCCAGTGGCCACGTTGCAG                         GTTATAGTGGTGATGTTTGGTTCCCACAACCAGCTCCAAAGGATCATCCAT
genomic: TGCGGACACTCAAGCAATTGCTGATGCTTGCTCCAGTGGCCACGTTGCAGgtaattctaa ... atttctatagGTTATAGTGGTGATGTTTGGTTCCCACAACCAGCTCCAAAGGATCATCCAT
EST: gi|207774417|gb|GD746283.1|GD746283
EST:     TGCGGACACTCAAGCAATTGCTGATGCTTGCTCCAGTGGCCACGTTGCAG                         GTTATAGTGGTGATGTTTGGTTCCCACAACCAGCTCCTAAAGGATCATCCA
genomic: TGCGGACACTCAAGCAATTGCTGATGCTTGCTCCAGTGGCCACGTTGCAGgtaattctaa ... atttctatagGTTATAGTGGTGATGTTTGGTTCCCACAACCAGCTCC-AAAGGATCATCCA
EST: gi|254344633|gb|GR855504.1|GR855504
EST:     TGCGGACACTCAAGCAATTGCTGATGCTTGCTCCAGTGGCCACGTTGCAG                         GTTATAGTGGTGATGTTTGGTTCCCACAACCAGCTCCAAAGGATCATCCAT
genomic: TGCGGACACTCAAGCAATTGCTGATGCTTGCTCCAGTGGCCACGTTGCAGgtaattctaa ... atttctatagGTTATAGTGGTGATGTTTGGTTCCCACAACCAGCTCCAAAGGATCATCCAT
EST: gi|209713325|gb|BW684412.1|BW684412
EST:     TGCGGACACTCAAGCAATTGCTGATGCTTGCTCCAGTGGCCACGTTGCAG                         GTTATAGTGGTGATGTTTGGTTCCCACAACCAGCTCCAAAGGATCATCCAT
genomic: TGCGGACACTCAAGCAATTGCTGATGCTTGCTCCAGTGGCCACGTTGCAGgtaattctaa ... atttctatagGTTATAGTGGTGATGTTTGGTTCCCACAACCAGCTCCAAAGGATCATCCAT
EST: gi|42722694|gb|CK768593.1|CK768593
EST:     TGCGGACACTCAAGCAATTGCTGATGCTTGCTCCAGTGGCCACGTTGCAG                         GTTATAGTGGTGATGTTTGGTTCCCACAACCAGCTCCAAAGGATCATCCAT
genomic: TGCGGACACTCAAGCAATTGCTGATGCTTGCTCCAGTGGCCACGTTGCAGgtaattctaa ... atttctatagGTTATAGTGGTGATGTTTGGTTCCCACAACCAGCTCCAAAGGATCATCCAT
EST: gi|213606749|gb|DB980637.1|DB980637
EST:     TGCGGACACTCAAGCAATTGCTGATGCTTGCTCCAGTGGCCACGTTGCAG                         GTTATAGTGGTGATGTTTGGTTCCCACAACCAGCTCCAAAGGATCATCCAT
genomic: TGCGGACACTCAAGCAATTGCTGATGCTTGCTCCAGTGGCCACGTTGCAGgtaattctaa ... atttctatagGTTATAGTGGTGATGTTTGGTTCCCACAACCAGCTCCAAAGGATCATCCAT
EST: gi|209718223|gb|BW657842.1|BW657842
EST:     TGCGGACACTCAAGCAATTGCTGATGCTTGCTCCAGTGGCCACGTTGCAG                         GTTATAGTGGTGATGTTTGGTTCCCACAACCAGCTCCAAAGGATCATCCAT
genomic: TGCGGACACTCAAGCAATTGCTGATGCTTGCTCCAGTGGCCACGTTGCAGgtaattctaa ... atttctatagGTTATAGTGGTGATGTTTGGTTCCCACAACCAGCTCCAAAGGATCATCCAT
EST: gi|151395171|gb|EV265042.1|EV265042
EST:     TGCGGACACTCAAGCAATTGCTGATGCTTGCTCCAGTGGCCACGTTGCAG                         GTTATAGTGGTGATGTTTGGTTCCCACAACCAGCTCCAAAGGATCATCCAT
genomic: TGCGGACACTCAAGCAATTGCTGATGCTTGCTCCAGTGGCCACGTTGCAGgtaattctaa ... atttctatagGTTATAGTGGTGATGTTTGGTTCCCACAACCAGCTCCAAAGGATCATCCAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTAAGTGCAAGAAAGGTGTCTTGATTGTTAACAATGCTCGAGGGGCAATTGCGGACACTCAAGCAATTGCTGATGCTTGCTCCAGTGGCCACGTTGCAGgtaattctaaaaccaggtgacaaaaatgtttgtgcttccagcagcaaaacaagaaattattattgaactaatgtagtaataccgtaattttgttaagata

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGAT