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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGGGCAATGTTGGCCACTTCACTGGGACAACCTAGTTTCATTAAGTCTGAATTTGAAAAAATTATGGTTCTAAGATAATGCTTCCACCAGACACACAGgtgttttcttatatcctcttcaaaaagtccacttctctattttttatgattttttcaattgtttatgtagcattcaaaaatccatttgtgatatattgtcaatgtcttattctatggactggtttctattttctaagttattagaactttcag

Basic information

species Glycine max
transcript GLYMA19G00920.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G00920.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv05s0077g00480.t01 (Vitis vinifera), 5'ss of exon 1
--CTTGGGCAATGTTGGCCACTTCACTGGGACAACCTAGTTTCATTAAGTCTGAATTTGAAAAAATTATGGTTCTAAGATAATGCTTCCACCAGACACACAGgtg-----ttttcttatatcctcttcaaaaagtccacttctctattttttatgattttttcaattgtttatgtagcattcaaaaatccatttgtgatatattgtcaatgtcttattctatggactggtttctattttctaagttattagaactttcag
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GGCATGGGCGATGCTTGCCACTTCACTGGGCCATCCTAGTTTGATTAAATCTGAGTTTGAAAAAAT-ATGTTTCTTGGATAATCCATCCAC-AGATACACAGgtaaagatttttctgccatcaacattgtggatgctgaaccgcaaatttctgaaacatgtt---ttgtct-cactgagtcataaaatgttgtag-----------------------------------------------------------------