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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCAGAATTATTGAGAACTGAATACACCCATTTCCTTGTTACTGGAGATGTTTACCGTAGGGATTCAATTGATTCAACTCATTATCCTGTCTTCCATCAAgtatgtccccatatgcagtaactggtttaatctaataataattaactttatataattttatcttttttattttgtag

Basic information

species Glycine max
transcript GLYMA18G52890.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G52890.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os12g34860.1 (Oryza sativa), 5'ss of exon 3
GGCAGAATTATTGAGAACTGAATACACCCATTTCCTTGTTACTGGAGATGTTTACCGTAGGGATTCAATTGATTCAACTCATTATCCTGTCTTCCATCAAgtatgtccccatatgcagtaactggtttaatctaataataattaactttatataattttatcttttttattttgtag
 |||||  |  | ||   || | |||| ||||||||||| ||||| |||||||| ||||||||||| |||||||||||||| ||||||  ||||||||| |||  |      | ||  || |    || |  || |   ||  ||   | | |  |  |   |||||     || ||
AGCAGAGCTGCTAAGGGATGGACACACACATTTCCTTGTAACTGGGGATGTTTATCGTAGGGATTCTATTGATTCAACTCACTATCCTTGCTTCCATCAGgtaaatgta---acgccatatc--acttgaaatatttccaaagaaaggtttgtgttgatgattttttgtacatgcag

upper sequence: GLYMA18G52890.1 (Glycine max), 5'ss of exon 4
lower sequence: AC211349.4_FGT001 (Zea mays), 5'ss of exon 3
GGCAGAATTATTGAGAACTGAATACACCCATTTCCTTGTTACTGGAGATGTTTACCGTAGGGATTCAATTGATTCAACTCATTATCCTGTCTTCCATCAAgta------tgtccccatatgcagtaactggtttaatc--taataataatt-aactttatataattttatcttt---tttattttgtag-----------
 || ||  |  | ||   || | | || || || ||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||      | |  |||| | || | |  |  ||  ||  | | |  |||  | || |  || |   ||  ||    || | |   |             
AGCTGAGCTGCTAAGGCATGGACATACACACTTTCTTGTAACTGGAGATGTTTACCGTAGGGATTCCATTGATTCAACTCACTATCCTGTCTTCCATCAGgtaactttatttttccatgttcacttaaggtctttttcgtttacaccaatccagctctggattagcatagattagaattaaatccatgttacaatccatg

upper sequence: GLYMA18G52890.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G078756_T01 (Zea mays), 5'ss of exon 3
GGCAGAATTATTGAGAACTGAATACACCCATTTCCTTGTTACTGGAGATGTTTACCGTAGGGATTCAATTGATTCAACTCATTATCCTGTCTTCCATCAAgtatgtccccatatgcagtaactggtttaatctaataataattaactttatataattttatcttttttattttgtag
 || ||  |  | ||   || |   || || || ||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||  |     | ||| |||     || ||| |  |  |||| |  ||| | |   |  ||||||   |  | ||||
AGCTGAGCTGCTAAGGGATGGACGTACACACTTTCTTGTAACTGGAGATGTTTACCGTAGGGATTCCATTGATTCAACTCACTATCCTGTCTTCCATCAGgtacttttgttt-tgccgtactcacttaaattttct--taatgaggtttgttttggta-atctttaacacat-gtag

upper sequence: GLYMA18G52890.1 (Glycine max), 5'ss of exon 4
lower sequence: AT3G58140.1 (Arabidopsis thaliana), 5'ss of exon 3
GGCAGAATTATTGAGAACTGAATACACCCATTTCCTTGTTACTGGAGATGTTTACCGTAGGGATTCAATTGATTCAACTCATTATCCTGTCTTCCATCAAgtatgtccccatatgcagtaactggtttaatctaataat------aattaactttatata-attttatcttttttattttgtag--
 || ||  | ||||| |  |   | |  | ||||||||| || || ||||||||||| || ||||| ||||| || ||||||||||| || |||||||| || | ||      ||  ||  |||  ||  |||  || |        ||  ||  | |    | |||| |||||||| |  ||   
AGCTGAGCTGTTGAGGAAAGGTCATAGTCGTTTCCTTGTAACCGGGGATGTTTACCGAAGAGATTCTATTGACTCTACTCATTATCCGGTTTTCCATCAGgtgt-tctattcttgaggtccctgtgtttttcttttactttggctgttttgctcgacaggtgtattatgttttttatctattacag

upper sequence: GLYMA18G52890.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv19s0027g01150.t01 (Vitis vinifera), 5'ss of exon 4
GGCAGAATTATTGAGAACTGAATACACCCATTTCCTTGTTACTGGAGATGTTTACCGTAGGGATTCAATTGATTCAACTCATTATCCTGTCTTCCATCAAgtat---gtccccatatgcagtaactggtttaatctaataataattaactttatataatttt-atcttttttattttgtag-------------
 |||||  | ||||| |  | | |||| ||||||||||| |||||||||||||| ||||| ||||| |||||||||||||| || ||||| || ||||| || |    || |    |  |  ||    | |  |||| ||| || |  ||| |  |  | || |  |   | | ||||                
AGCAGAGCTGTTGAGGAGGGGACACACTCATTTCCTTGTGACTGGAGATGTTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAGgtttcttatctctgattttatcaatgattattttctattaacaagtttcttaacgttttcttcagttcaataactttgcttcctgatcatgcag

upper sequence: GLYMA18G52890.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv11s0103g00120.t01 (Vitis vinifera), 5'ss of exon 3
GGCAGAATTATTGAGAACTGAATACACCCATTTCCTTGTTACTGGAGATGTTTACCGTAGGGATTCAATTGATTCAACTCATTATCCTGTCTTCCATCAAgtat---gtccccatatgcagtaactggtttaatctaataataattaactttatataatttt-atcttttttattttgtag-------------
 |||||  | ||||| |  | | |||| ||||||||||| |||||||||||||| ||||| ||||| |||||||||||||| || ||||| || ||||| || |    || |    |   | ||    | |  |||| |||  | |  ||| || |  | || |  |   | | ||||                
AGCAGAGCTGTTGAGGAGGGGACACACTCATTTCCTTGTGACTGGAGATGTTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAGgtttcttatctctgattcttgcaatgattgttttctattaactagtttcttaatgttttcttcagttcaataactttgcttcctgatcatgcag

upper sequence: GLYMA18G52890.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv19s0027g01380.t01 (Vitis vinifera), 5'ss of exon 3
GGCAGAATTATTGAGAACTGAATACACCCATTTCCTTGTTACTGGAGATGTTTACCGTAGGGATTCAATTGATTCAACTCATTATCCTGTCTTCCATCAAgtatgtc-cccat-atgcagtaactggtt-taatctaataataattaactttatataattttatcttttttattttgtag-----
 |||||  | ||||| |  | | |||| ||||||||||| |||||||||||||| ||||| ||||| |||||||||||||| || | ||| || ||| | || | |   | || ||    | | || || |  |||| ||| || |  ||| || |  | ||   ||   ||  || |       
AGCAGAGCTGTTGAGGAGGGGACACACTCATTTCCTTGTGACTGGAGATGTTTATCGTAGAGATTCCATTGATTCAACTCACTACCGTGTTTTTCATTAGgtttcttgtctatgatttgatcaatgattgttttctattaacaagtttcttaatgttttcttcagttcaataacttatcatgcag

upper sequence: GLYMA18G52890.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv19s0027g01220.t01 (Vitis vinifera), 5'ss of exon 3
GGCAGAATTATTGAGAACTGAATACACCCATTTCCTTGTTACTGGAGATGTTTACCGTAGGGATTCAATTGATTCAACTCATTATCCTGTCTTCCATCAAgtat---gtccccatatgcagtaactggtttaatctaataataattaactttatataattttatcttttttattttgtag-----
 |||||  ||||||| |  | | |||| ||||||||||| |||||||||||||| | ||| ||||| |||||||||||||| || ||||| || ||||| || |    || |    |  |  ||    | |  |||| ||| || |  ||| || |  | ||   ||   ||  || |       
AGCAGAGCTATTGAGGAGGGGACACACTCATTTCCTTGTGACTGGAGATGTTTATCCTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAGgtttcttatctctgattttatcaatgattgttttctattaacaagtttcttaatgttttcttcagttcaataacttatcatgcag

upper sequence: GLYMA18G52890.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv19s0027g01200.t01 (Vitis vinifera), 5'ss of exon 2
-GGCAGAATTATTGAGAACTGAATACACCCATTTCCTTGTTACTGGAGATGTTTACCGTAGGGATTCAATTGATTCAACTCATTATCCTGTCTTCCATCAAgtat---gtccccatatgcagtaactggtttaatctaataataa-----ttaactttatataattttatcttttttattttgtag--------
  |||||  | ||||| |  | | |||| ||||||||||| |||||||||||||| | ||| ||||  |||||||||||||| || ||||| || ||||| || |    |  |    |  |  ||    | |  |||| ||| ||     |||  |||   | | || |    ||||  ||  |          
AAGCAGAGCTGTTGAGGAGGGGACACACTCATTTCCTTGTGACTGGAGATGTTTATCATAGAGATTTCATTGATTCAACTCACTA-CCTGTTTTTCATCAGgtttcttatttctgattttatcaatgattgttttctattaacaagtttcttatgttttcttcagttcaataattttgcttcctgatcatgcag