1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GTAACAACATCCGTTACTACATTCTTCCTGACAGCTTGAATCTCGAGACCCTGCTTGTGGAAGAGACACCTAAGATCAAACCCAAGAAGCCAACTGCTGGtactgtatatagtttaactacaaaatttacatccatgctcaattcattctaattgtttcttggtgagttcctcaggtttaatttttaacatattttcatcgcatttccagg
species | Glycine max |
transcript | GLYMA18G52210.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTGCTTGTGGAAGAGACACCTAAGATCAAACCCAAGAAGCCAACTGCTGG GAAACCTTTGGGACGTGGACGAGGAAGGGGCCGTGGGCGTGGGCGTGGACGEST: gi|192328861|gb|FK023263.1|FK023263
genomic: CTGCTTGTGGAAGAGACACCTAAGATCAAACCCAAGAAGCCAACTGCTGGtactgtatat ... catttccaggGAAACCTTTGGGACGTGGACGAGGAAGGGGCCGTGGGCGTGGGCGTGGACG
EST: CTGCTTGTGGAAGAGACACCTAAGATCAAACCCAAGAAGCCAACTGCTGG GAAACCTTTGGGACGTGGACGAGGAAGGGGCCGTGGGCGTGGGCGTGGACGEST: gi|31473009|gb|CD415037.1|CD415037
genomic: CTGCTTGTGGAAGAGACACCTAAGATCAAACCCAAGAAGCCAACTGCTGGtactgtatat ... catttccaggGAAACCTTTGGGACGTGGACGAGGAAGGGGCCGTGGGCGTGGGCGTGGACG
EST: CTGCTTGTGGAAGAGACACCTAAGATCAAACCCAAGAAGCCAACTGCTGG GAAACCTTTGGGACGTGGACGAGGAAGGGGTCGTGGGCGTGGGCGTGGACGEST: gi|298192082|gb|HO036164.1|HO036164
genomic: CTGCTTGTGGAAGAGACACCTAAGATCAAACCCAAGAAGCCAACTGCTGGtactgtatat ... catttccaggGAAACCTTTGGGACGTGGACGAGGAAGGGGCCGTGGGCGTGGGCGTGGACG
EST: CTGCTTGTGGAAGAGACACCTAAGATCATACCCAAGAAGCCAACTGCTGG GAAACCTTTGGGACGTGGACGEST: gi|23728045|gb|BU762064.1|BU762064
genomic: CTGCTTGTGGAAGAGACACCTAAGATCAAACCCAAGAAGCCAACTGCTGGtactgtatat ... catttccaggGAAACCTTTGGGACGTGGACG
EST: CTGCTTGTGGAAGAGACACCTAAGATCAAACCCAAGAAGCCAACTGCTGG GAAACCTTTGGGACGTGGACGAGGAAGGGGCCGTGGGCGTGGGCGTGGACGEST: gi|33388742|gb|CA851949.1|CA851949
genomic: CTGCTTGTGGAAGAGACACCTAAGATCAAACCCAAGAAGCCAACTGCTGGtactgtatat ... catttccaggGAAACCTTTGGGACGTGGACGAGGAAGGGGCCGTGGGCGTGGGCGTGGACG
EST: CTGCTTGTGGAAGAGACACCTAAGATCAAACCCAAGAAGCCAACTGCTGG GAAACCTTTGGGACGTGGACGAGGAAGGGGTCGTGGGCGTGGGCGTGGACGEST: gi|298175521|gb|HO018232.1|HO018232
genomic: CTGCTTGTGGAAGAGACACCTAAGATCAAACCCAAGAAGCCAACTGCTGGtactgtatat ... catttccaggGAAACCTTTGGGACGTGGACGAGGAAGGGGCCGTGGGCGTGGGCGTGGACG
EST: CTGCTTGTGGAAGAGACACCTAAGATCAAACCCAAGAAGCCAACTGCTGG GAAACCTTTGGGACGTGGACGAGGAAGGGGTCGTGGGCGTGGGCGTGGACGEST: gi|298174943|gb|HO014860.1|HO014860
genomic: CTGCTTGTGGAAGAGACACCTAAGATCAAACCCAAGAAGCCAACTGCTGGtactgtatat ... catttccaggGAAACCTTTGGGACGTGGACGAGGAAGGGGCCGTGGGCGTGGGCGTGGACG
EST: CTGCTTGTGGAAGAGACACCTAAGATCAAACCCAAGAAGCCAACTGCTGG GAAACCTTTGGGACGTGGACGAGGAAGGGGTCGTGGGCGTGGGCGTGGACG
genomic: CTGCTTGTGGAAGAGACACCTAAGATCAAACCCAAGAAGCCAACTGCTGGtactgtatat ... catttccaggGAAACCTTTGGGACGTGGACGAGGAAGGGGCCGTGGGCGTGGGCGTGGACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTAACAACATCCGTTACTACATTCTTCCTGACAGCTTGAATCTCGAGACCCTGCTTGTGGAAGAGACACCTAAGATCAAACCCAAGAAGCCAACTGCTGGtactgtatatagtttaactacaaaatttacatccatgctcaattcattctaattgtttcttggtgagttcctcaggtttaatttttaacatattttcatcgcatttccagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC