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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATATGGAGGAGGCAGGAGTAGATGGCGTTCTCATTGTGCAGCCAATATTTCATAAATTTGATCATAGTTATGTCACAAGgtttgtttcacattttgccccagtttatgcaagaaatactgaaatggcagttggtgtctatggaagatgtagtggtaatatatgatctcagcatttgacc...

Basic information

species Glycine max
transcript GLYMA18G52160.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192313847|gb|FK008755.1|FK008755
EST:     CTCATTGTGCAGCCAATATTTCATAAATTTGATCATAGTTATGTCACAAG                         TGCTTTGAAGAAATACCCGACCAAATTTGTTGGTTGTTGCCTTGCTAATCC
genomic: CTCATTGTGCAGCCAATATTTCATAAATTTGATCATAGTTATGTCACAAGgtttgtttca ... cattggacagTGCTTTGAAGAAATACCCGACCAAATTTGTTGGTTGTTGCCTTGCTAATCC
EST: gi|298193264|gb|HO033698.1|HO033698
EST:     CTCATTGTGCAGCCAATATTTCATAAATTTGATCATAGTTATGTCACAAG                         TGCTTTGAAGAAATACCCGACCAAATTTGTTGGTTGTTGCCTTGCTAATCC
genomic: CTCATTGTGCAGCCAATATTTCATAAATTTGATCATAGTTATGTCACAAGgtttgtttca ... cattggacagTGCTTTGAAGAAATACCCGACCAAATTTGTTGGTTGTTGCCTTGCTAATCC
EST: gi|6501834|gb|AW203193.1|AW203193
EST:     CTCATTGTGCAGCCAATATTTCATAAATTTGATCATAGTTATGTCACAAG                         TGCTTTGAAGAAATACCCGACCAAATTTGTTGGTTGTTGCCTTGCTAATCC
genomic: CTCATTGTGCAGCCAATATTTCATAAATTTGATCATAGTTATGTCACAAGgtttgtttca ... cattggacagTGCTTTGAAGAAATACCCGACCAAATTTGTTGGTTGTTGCCTTGCTAATCC
EST: gi|5676856|gb|AI937986.1|AI937986
EST:     CTCATTGTGCAGCCAATATTTCATAAATTTGATCATAGTTATGTCACAAG                         TGCTTTGAAGAAATACCCGACCAAATTTGTTGGTTGTTGCCTTGCTAATCC
genomic: CTCATTGTGCAGCCAATATTTCATAAATTTGATCATAGTTATGTCACAAGgtttgtttca ... cattggacagTGCTTTGAAGAAATACCCGACCAAATTTGTTGGTTGTTGCCTTGCTAATCC
EST: gi|21677449|gb|BQ629800.1|BQ629800
EST:     CTCATTGTGCAGCCAATATTTCATAAATTTGATCATAGTTATGTCACAAG                         TGCTTTGAAGAAATACCCGACCAAATTTGTTGGTTGTTGCCTTGCTAATCC
genomic: CTCATTGTGCAGCCAATATTTCATAAATTTGATCATAGTTATGTCACAAGgtttgtttca ... cattggacagTGCTTTGAAGAAATACCCGACCAAATTTGTTGGTTGTTGCCTTGCTAATCC