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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTTTGCTCATTGCTTAAATGGAGTAAATGGAGGTGGTATATTTGCTATTGGGCATGTTGTGCAACCTAAAGTAAACATGACTCCATTATTACCAGACCagtatgccattcacttaatatactttagaatgagattagtttttcttatagtgttattaattactcttttgaggataagtttgttttagtttttttttaa...

Basic information

species Glycine max
transcript GLYMA18G51920.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G51920.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G05840.1 (Arabidopsis thaliana), 5'ss of exon 4
ATGTTTGCTCATTGCTTAAATGGAGTAAATGGAGGTGGTATATTTGCTATTGGGCATGTTGTGCAACCTAAAGTAAACATGACTCCATTATTACCAGACCagtatgccattcacttaatatactttagaatgagattagtttt-tcttatagtgttattaattactcttttgaggataagtttgttttagtttttttttaa-
 | ||||||||||||||| |||||  ||||||||||||||||||||||||||| | |||||||||||| |||||||||||||| |||||  ||||  | ||||| | ||  || |   |    |||| ||||   ||  |||| |  |  |     | | || |     |  | ||||   | ||    |       |    
-TATTTGCTCATTGCTTAGATGGAAGAAATGGAGGTGGTATATTTGCTATTGGACGTGTTGTGCAACCAAAAGTAAACATGACACCATTGGTACCCAATCAgtacgtcaa-cattgttttccttttataatgtttttccttttatacttcaaatacaatcataagaagctcaatgatatactggtagaggcagccactatgt

upper sequence: GLYMA18G51920.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv05s0062g01370.t01 (Vitis vinifera), 5'ss of exon 4
ATGTTTGCTCATTGCTTAAATGGAGTAAATGGAGGTGGTATATTTGCTATTGGGCATGTTGTGCAACCTAAAGTAAACATGACTCCATTATTACCAGACCagtatgc---cattcacttaatatactttagaatgagattagtttttcttatagtgttattaattactcttttgaggataagtttgttttagtttttttttaa
 ||||||| || |||||| ||||  ||||||||||||| || ||||||||||||||| ||||||| || ||||| ||||  ||||||||  ||||| |||||||||     |||    |   |   | |   |  | | ||     |  | | |||   || |||  | ||||     |  |     | || |||||||||  
-TGTTTGCACACTGCTTAGATGGTTTAAATGGAGGTGGGATCTTTGCTATTGGGCATATTGTGCAGCCAAAAGTTAACACAACTCCATTGGTACCAAACCAgtatgtatatatttctctgtgaacgtctgataaaaaaataaaaaattctgt-gtgaactttattgttgtttttgatctttgcagtctctattttttttttc-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120492464|gb|EH220631.1|EH220631
EST:     TGGGCATGTTGTGCAACCTAAAGTAAACATGACTCCATTATTACCAGACC                         AGCCACACTACAGTGTTAATATGACTGCAGTTCAAGTTGGCCATGCTTTCC
genomic: TGGGCATGTTGTGCAACCTAAAGTAAACATGACTCCATTATTACCAGACCagtatgccat ... tggttttttaGGCCACACTACAGTGTTAATATGACTGCAGTTCAAGTTGGCCATGCTTTCC
EST: gi|17023874|gb|BM094908.1|BM094908
EST:     TGGGCATGTTGTGCAACCTAAAGTAAACATGACTCCATTATTACCAGACC                         AGCCACACTACAGTGTTAATATGACTGCAGTTCAAGTTGGCCATGCTTTCC
genomic: TGGGCATGTTGTGCAACCTAAAGTAAACATGACTCCATTATTACCAGACCagtatgccat ... tggttttttaGGCCACACTACAGTGTTAATATGACTGCAGTTCAAGTTGGCCATGCTTTCC
EST: gi|6915558|gb|AW397088.1|AW397088
EST:     CTAAAGTAAACATGACTCCATTATTACCAGACC                         AGCCACACTACAGTGTTAATATGACTGCAGTTCAAGTTGGCCATGCTTTCC
genomic: CTAAAGTAAACATGACTCCATTATTACCAGACCagtatgccat ... tggttttttaGGCCACACTACAGTGTTAATATGACTGCAGTTCAAGTTGGCCATGCTTTCC