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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACAATGGCAATGTGGGATATGCATTCATCAACATGATCAATCCTGGCTTGATTATACTATTCTATCAGgtatgctatacaaaatgatgatgacaatgaaaatgattgctgttaaacttataatcacataacattcacagacacacgcatacacactgtactaatagactaacttatgatgcatttctggcag

Basic information

species Glycine max
transcript GLYMA18G51690.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G51690.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G451716_T01 (Zea mays), 5'ss of exon 13
AACAATGGCAATGTGGGATATGCATTCATCAACATGATCAATCCTGGCTTGATTATACTATTCTATCAGgtatgctatacaaaatgatgatgacaatgaaaatgattgctgttaaacttataatcacataacattcacagac-acacgcatacacactgtactaatagactaacttatgatgcatttctggcag
|| ||  ||||||| || |||||||||||||||||||||||||||| |   ||| | | ||| ||| ||||  | | |  ||||      | | ||   | | ||   || | |         |  |||   ||| | | |  | || |    |   |||  | | |                           
AATAAGTGCAATGTTGGTTATGCATTCATCAACATGATCAATCCTGACAATATTGTTCCATTTTATAAGgtgagat-tctaaaacatacttaaaaaaacagacgaac-ctatgaggagctaggtagcattttattaagaaattaaactccccaaatttgtcttgacaagga-----------------------