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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGGGACAGTTTACCTCTTCTCTCTTCTTGGAGCCTTCCTTAGTGACTCTTACTGGGGAAGGTACATGACCTGTGCCATCTTCCAGGTCATATTTGTTATtgtaagtagttatccatattgtacatacaaaagctatagctagcatctaattaatgatctaactttggactaataaataatatgtgttgtcggatttatt...

Basic information

species Glycine max
transcript GLYMA18G49470.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G49470.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G044851_T01 (Zea mays), 5'ss of exon 3
CAGGGACAGTTTACCTCTTCTCTCTTCTTGGAGCCTTCCTTAGTGACTCTTACTGGGGAAGGTACATGACCTGTGCCATCTTCCAGGTCATATTTGTTATtgtaagtagttatccatattgtacatacaaaagctatagctagcatctaattaatgatctaactttggactaataaataatatgtgttgtcggatttatt---
  || || || ||| | ||||| ||  | || |||||||| || ||||| ||||||||| | |||| |||||| ||||||||||||| ||| |||||  | |||||| |    |       ||| ||  ||       ||     | |    |  |||||  |  |  ||  || |  |   ||||| |       | ||   
-GGGCACCGTGTACATGTTCTCCCTCATCGGCGCCTTCCTCAGCGACTCCTACTGGGGACGCTACAAGACCTGCGCCATCTTCCAGGCCATCTTTGTCCTCgtaagtcgcacacgtctacctacctattaatcgacctgccgattttt--ccatcgatctgccaatctaccgatcagcagcgtgtgtcggaaagagttttcac
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254316096|gb|GR825905.1|GR825905
EST:     TACTGGGGAAGGTACATGACCTGTGCCATCTTCCAGGTCATATTTGTTAT                         TGGTTTGGTGTCATTATCACTATCGTCTTACATATTCCTACTGAAGCCAAG
genomic: TACTGGGGAAGGTACATGACCTGTGCCATCTTCCAGGTCATATTTGTTATtgtaagtagt ... ctacgtaacaGGGTTTGGTGTCATTATCACTATCGTCTTACATATTCCTACTGAAGCCAAG
EST: gi|254348280|gb|GR851959.1|GR851959
EST:     ATGACCTGTGCCATCTTCCAGGTCATATTTGTTAT                         TGGTTTGGTGTCATTATCACTATCGTCTTACATATTCCTACTGAAGCCAAG
genomic: ATGACCTGTGCCATCTTCCAGGTCATATTTGTTATtgtaagtagt ... ctacgtaacaGGGTTTGGTGTCATTATCACTATCGTCTTACATATTCCTACTGAAGCCAAG