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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAGgtaagagatagtcaaccattttgcataacaatctttcaaaatctaatggaaatttaggtgttgagtaaactatgtagtttgagaaagcaatctcattaaaactctctaaaacatctctaaagcagtaatttgtattctgttttatggaacag

Basic information

species Glycine max
transcript GLYMA18G49070.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G49070.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv14s0108g00010.t01 (Vitis vinifera), 5'ss of exon 4
-TCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAGgtaagagatagtcaaccattttgcataacaatctttcaaaatctaatggaaatttaggtgttgagtaaactatgtagtttgagaaagcaatctcattaaaactctctaaaacatctctaaagcagtaatttgtattctgttttatggaacag---------
 | ||    ||  | || ||  |||||||||||||||| |||||| |||| |||| ||| ||||||||||||||||||||||| ||||||||  || |        ||   ||   ||    |     | | |  |  |     || | ||   || |   |   |||   |  | |||| ||||| | |   |   |    | |  | || |   |  | |    |||| |||   |          
CTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaattgatgtttggttcctatcttaagaagttgttttattaatgtcaggggagtatggatgcaattgcttctgttgctcaccccatcttattaagattagatgctaacattatggaccattgtatgatttctaattttttggtgaatttatcacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193725524|gb|FK660616.1|FK660616
EST:     TCTGAAGGCTTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAG                         GTGGAAGTTCAGTACTTGCATGACTATGCT
genomic: TCTGAAGGCT-ATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAGgtaagagata ... tatggaacagGTGGAAGTTCAGTACTTGCATGACTATGCT
EST: gi|9204535|gb|BE330759.1|BE330759
EST:     GTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAG                         GTGGAAGTTCAGTACTTGCATGACTATGCTGGAATAAGCACCAGTGTTGGG
genomic: GTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAGgtaagagata ... tatggaacagGTGGAAGTTCAGTACTTGCATGACTATGCTGGAATAAGCACCAGTGTTGGG
EST: gi|213611942|gb|DB964834.1|DB964834
EST:     GTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAG                         GTGGAAGTTCAGTACTTGCATGACTATGCTGGAATAAGCACCAGTGTTGGG
genomic: GTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAGgtaagagata ... tatggaacagGTGGAAGTTCAGTACTTGCATGACTATGCTGGAATAAGCACCAGTGTTGGG
EST: gi|58015357|gb|CX702099.1|CX702099
EST:     GTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAG                         GTGGAAGTTCAGTACTTGCATGACTATGCTGGAATAAGCACCAGTGTTGGG
genomic: GTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAGgtaagagata ... tatggaacagGTGGAAGTTCAGTACTTGCATGACTATGCTGGAATAAGCACCAGTGTTGGG
EST: gi|192319809|gb|FK011905.1|FK011905
EST:     GTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAG                         GTGGAAGTTCAGTACTTGCATGACTATGCTGGAATAAGCACCAGTGTTGGG
genomic: GTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAGgtaagagata ... tatggaacagGTGGAAGTTCAGTACTTGCATGACTATGCTGGAATAAGCACCAGTGTTGGG
EST: gi|208308320|gb|GE109664.1|GE109664
EST:     GTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAG                         GTGGAAGTTCAGTACTTGCATGACTATGCTGGAATAAGCACCAGTGTTGGG
genomic: GTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAGgtaagagata ... tatggaacagGTGGAAGTTCAGTACTTGCATGACTATGCTGGAATAAGCACCAGTGTTGGG
EST: gi|13252098|gb|BG363001.1|BG363001
EST:     GTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAG                         GTGGAAGTTCAGTACTTGCATGACTATGCTGGAATAAGCACCAGTGTTGGG
genomic: GTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAGgtaagagata ... tatggaacagGTGGAAGTTCAGTACTTGCATGACTATGCTGGAATAAGCACCAGTGTTGGG
EST: gi|193361033|gb|FK326881.1|FK326881
EST:     TTCCTGACCAAAAGGTCTGGAAAG                         GTGGAAGTTCAGTACTTGCATGACTATGCTGGAATAAGCACCAGTGTTGGG
genomic: TTCCTGACC-AAAGGTCTGGAAAGgtaagagata ... tatggaacagGTGGAAGTTCAGTACTTGCATGACTATGCTGGAATAAGCACCAGTGTTGGG
EST: gi|38192070|gb|CF921276.1|CF921276
EST:     GTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAG                         GTGGAAGTTCAGTACTTGCATGACTATGCTGGAATAAGCACCAGTGTTGGG
genomic: GTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAGgtaagagata ... tatggaacagGTGGAAGTTCAGTACTTGCATGACTATGCTGGAATAAGCACCAGTGTTGGG
EST: gi|18733680|gb|BM527751.1|BM527751
EST:     GTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAG                         GTGGAAGTTCAGTACTTGCATGACTATGCTGGAATAAGCACCAGTGTTGGG
genomic: GTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAGgtaagagata ... tatggaacagGTGGAAGTTCAGTACTTGCATGACTATGCTGGAATAAGCACCAGTGTTGGG
EST: gi|16347720|gb|BI973315.1|BI973315
EST:     GTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAG                         GTGGAAGTTCAGTACTTGCATGACTATGCTGGAATAAGCACCAGTGTTGGG
genomic: GTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAGgtaagagata ... tatggaacagGTGGAAGTTCAGTACTTGCATGACTATGCTGGAATAAGCACCAGTGTTGGG
EST: gi|20813195|gb|BQ297673.1|BQ297673
EST:     GTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAG                         GTGGAAGTTCAGTACTTGCATGACTATGCTGGAATAAGCACCAGTGTTGGG
genomic: GTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAGgtaagagata ... tatggaacagGTGGAAGTTCAGTACTTGCATGACTATGCTGGAATAAGCACCAGTGTTGGG
EST: gi|14516484|gb|BI095156.1|BI095156
EST:     GTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAG                         GTGGAAGTTCATTACTTGCATGACTATGCTGGAATAAGCACCAGTGTTGGG
genomic: GTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAGgtaagagata ... tatggaacagGTGGAAGTTCAGTACTTGCATGACTATGCTGGAATAAGCACCAGTGTTGGG
EST: gi|10845161|gb|BF068322.1|BF068322
EST:     GTCTGAAGGCTATNTNTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAG                         GTGGAAGTTCANTACTTGCATGACTATTGCTGGAATA
genomic: GTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAGgtaagagata ... tatggaacagGTGGAAGTTCAGTACTTGCATGACTAT-GCTGGAATA
EST: gi|5760695|gb|AI966058.1|AI966058
EST:     GTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAG                         GTGGAAGTTCAGTACTTGCATGACTATGCTGGAATAAGCACCAGTGTTGGG
genomic: GTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAGgtaagagata ... tatggaacagGTGGAAGTTCAGTACTTGCATGACTATGCTGGAATAAGCACCAGTGTTGGG
EST: gi|16347860|gb|BI973455.1|BI973455
EST:     GTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAG                         GTGGAAGTTCAGTACTTGCATGACTATGCTGGAATAAGCACCAGTGTTGGG
genomic: GTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAGgtaagagata ... tatggaacagGTGGAAGTTCAGTACTTGCATGACTATGCTGGAATAAGCACCAGTGTTGGG
EST: gi|6746954|gb|AW317410.1|AW317410
EST:     GTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAG                         GTGGAAGTTCAGTACTTGCATGACTATGCTGGAATAAGCACCAGTGTTGGG
genomic: GTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAGgtaagagata ... tatggaacagGTGGAAGTTCAGTACTTGCATGACTATGCTGGAATAAGCACCAGTGTTGGG
EST: gi|213611750|gb|DB960650.1|DB960650
EST:     GTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAG                         GTGGAAGTTCAGTACTTGCATGACTATGCTGGAATAAGCACCAGTGTTGGG
genomic: GTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAGgtaagagata ... tatggaacagGTGGAAGTTCAGTACTTGCATGACTATGCTGGAATAAGCACCAGTGTTGGG
EST: gi|207781546|gb|GD754363.1|GD754363
EST:     GTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAG                         GTGGAAGTTCAGTACTTGCATGACTATGCTGGAATAAGCACCAGTGTTGGG
genomic: GTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAGgtaagagata ... tatggaacagGTGGAAGTTCAGTACTTGCATGACTATGCTGGAATAAGCACCAGTGTTGGG
EST: gi|192314315|gb|FK007053.1|FK007053
EST:     GTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAG                         GTGGAAGTTCAGTACTTGCATGACTATGCTGGAATAAGCACCAGTGTTGGG
genomic: GTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAGgtaagagata ... tatggaacagGTGGAAGTTCAGTACTTGCATGACTATGCTGGAATAAGCACCAGTGTTGGG
EST: gi|193658831|gb|FK607276.1|FK607276
EST:     GTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAG                         GTGGAAGTTCAGTACT
genomic: GTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAGgtaagagata ... tatggaacagGTGGAAGTTCAGTACT
EST: gi|19935870|gb|BQ080621.1|BQ080621
EST:     GTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAG                         GTGGAAGTTCAGTACTTGCATGACTATGCTGGAATAAGCACCAGTGTTGGG
genomic: GTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAGgtaagagata ... tatggaacagGTGGAAGTTCAGTACTTGCATGACTATGCTGGAATAAGCACCAGTGTTGGG
EST: gi|213614932|gb|DB957012.1|DB957012
EST:     GTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAG                         GTGGAAGTTCAGTACTTGCATGACTATGCTGGAATAAGCACCAGTGTTGGG
genomic: GTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAGgtaagagata ... tatggaacagGTGGAAGTTCAGTACTTGCATGACTATGCTGGAATAAGCACCAGTGTTGGG
EST: gi|120531919|gb|EH260052.1|EH260052
EST:     GTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAG                         GTGGAAGTTCAGTACTTGCATGACTATGCTGGAATAAGCACCAGTGTTGGG
genomic: GTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAGgtaagagata ... tatggaacagGTGGAAGTTCAGTACTTGCATGACTATGCTGGAATAAGCACCAGTGTTGGG
EST: gi|193667381|gb|FK611425.1|FK611425
EST:     GTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAGGGTCTGGAAAG                         GTGGA-GTTCAGTACTTGCATGACTATGCTGGAATAAGCACCA
genomic: GTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAGgtaagagata ... tatggaacagGTGGAAGTTCAGTACTTGCATGACTATGCTGGAATAAGCACCA
EST: gi|16280918|gb|BI944216.1|BI944216
EST:     GTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAG                         GTGGAAGTTCAGTACTTGCATGACTATGCTGGAATAAGCACCAGTGTTGGG
genomic: GTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAGgtaagagata ... tatggaacagGTGGAAGTTCAGTACTTGCATGACTATGCTGGAATAAGCACCAGTGTTGGG
EST: gi|19935867|gb|BQ080620.1|BQ080620
EST:     GTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAG                         GTGGAAGTTCAGTACTTGCATGACTATGCTGGAATAAGCACCAGTGTTGGG
genomic: GTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAGgtaagagata ... tatggaacagGTGGAAGTTCAGTACTTGCATGACTATGCTGGAATAAGCACCAGTGTTGGG
EST: gi|12497297|gb|BG047496.1|BG047496
EST:     GTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAG                         GTG-AAGTTCAGTACTTGCATGACTATGCTGGAATAAGCACCAGTGTTGGG
genomic: GTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAGgtaagagata ... tatggaacagGTGGAAGTTCAGTACTTGCATGACTATGCTGGAATAAGCACCAGTGTTGGG
EST: gi|209714837|gb|BW682002.1|BW682002
EST:     GTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAG                         GTGGAAGTTCAGTACTTGCATGACTATGCTGGAATAAGCACCAGTGTTGGG
genomic: GTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAGgtaagagata ... tatggaacagGTGGAAGTTCAGTACTTGCATGACTATGCTGGAATAAGCACCAGTGTTGGG
EST: gi|8826174|gb|BE209834.1|BE209834
EST:     GTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAG                         GTGGAAGTTCAGTACTTGCATGACTATGCTGGAATAAGCACCAGTGTTGGG
genomic: GTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAGgtaagagata ... tatggaacagGTGGAAGTTCAGTACTTGCATGACTATGCTGGAATAAGCACCAGTGTTGGG
EST: gi|26047978|gb|CA784608.1|CA784608
EST:     GTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAG                         GTGGAAGTTCAGTACTTGCATGACTATGCTGGAATAAGCACCAGTGTTGGG
genomic: GTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAGgtaagagata ... tatggaacagGTGGAAGTTCAGTACTTGCATGACTATGCTGGAATAAGCACCAGTGTTGGG
EST: gi|298183076|gb|HO028339.1|HO028339
EST:     GTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAG                         GAGGAAGTTCAGTACTTGCATGACTATGCTGGAATAAGCACCAGTGTTGGG
genomic: GTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAGgtaagagata ... tatggaacagGTGGAAGTTCAGTACTTGCATGACTATGCTGGAATAAGCACCAGTGTTGGG
EST: gi|192322089|gb|FK012193.1|FK012193
EST:     GTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAG                         GTGGAAGTTCAGTACTTGCATGACTATGCTGGAATAAGCACCAGTGTTGGG
genomic: GTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAGgtaagagata ... tatggaacagGTGGAAGTTCAGTACTTGCATGACTATGCTGGAATAAGCACCAGTGTTGGG
EST: gi|15813385|gb|BI785660.1|BI785660
EST:     GTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAG                         GTGGAAGTTCAGTACTTGCATGACTATGCTGGAATAAGCACCAGTGTTGGG
genomic: GTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAGgtaagagata ... tatggaacagGTGGAAGTTCAGTACTTGCATGACTATGCTGGAATAAGCACCAGTGTTGGG
EST: gi|58014974|gb|CX701716.1|CX701716
EST:     TTTTTAGCTTCAAAGTTCTTGACCAAAAGTCTGGAAA-                         GTGGAAAGTTCAGTACTTGCATGACTATGCTGGAATAAGCACCAGTGTTGG
genomic: TTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAGgtaagagata ... tatggaacagGTGG-AAGTTCAGTACTTGCATGACTATGCTGGAATAAGCACCAGTGTTGG
EST: gi|192329954|gb|FK021540.1|FK021540
EST:     GTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAG                         GTGGAAGTTCAGTACTTGCATGACTATGCTGGAATAAGCACCAGTGTTGGG
genomic: GTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAGgtaagagata ... tatggaacagGTGGAAGTTCAGTACTTGCATGACTATGCTGGAATAAGCACCAGTGTTGGG
EST: gi|192314316|gb|FK007054.1|FK007054
EST:     GTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAG                         GTGGAAGTTCAGTACTTGCATGACTATGCTGGAATAAGCACCAGTGTTGGG
genomic: GTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAGgtaagagata ... tatggaacagGTGGAAGTTCAGTACTTGCATGACTATGCTGGAATAAGCACCAGTGTTGGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAGgtaagagatagtcaaccattttgcataacaatctttcaaaatctaatggaaatttaggtgttgagtaaactatgtagtttgagaaagcaatctcattaaaactctctaaaacatctctaaagcagtaatttgtattctgttttatggaacag

- - - - - - - - - - - - - - - - - - - CTGAAG