Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAATCTCATACATGGCAGAACGTGTGGTTGGCACTGGTTCTTTTGGTGTTGTTTATCAGgtattgatattttttttgctgtatttctttactcgtaagtattgatcctttgcttcactgttctatggatttgtctagttactttctttgcttatctgctttgctttgaatatactgtag

Basic information

species Glycine max
transcript GLYMA18G45960.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G45960.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os10g37740.1 (Oryza sativa), 5'ss of exon 4
ACAATCTCATACATGGCAGAACGTGTGGTTGGCACTGGTTCTTTTGGTGTTGTTTATCAGgtattgatattttttttgctgtatttctttactcgtaagtattgatcctttgcttcactgttctatggatttgtctagttactttctttgcttatctgctttgctttgaatatactgtag
|   | |||||||||||||||||||| ||||| |||||||| |||||||| |||| ||||||||    ||| |||       ||||    | ||    |||| | | ||   | ||    |  |    ||||      ||      |    |||| ||    | | |  ||| |    ||
AAGGTATCATACATGGCAGAACGTGTAGTTGGTACTGGTTCATTTGGTGTAGTTTTTCAGgtat----attatttc----acattttgccattct---gtatcgctact---cctcgtcatgatggaaatttacaatatttgggcataaagttat-tgaccagttattgatacaa-acag

upper sequence: GLYMA18G45960.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv15s0048g02010.t01 (Vitis vinifera), 5'ss of exon 4
ACAATCTCATACATGGCAGAACGTGTGGTTGGCACTGGTTCTTTTGGTGTTGTTTATCAGgta-ttgatattttttttgctgtatttctttactcgtaagtattgatcctttgcttcactgttctatggatttgtctagttactttctttgcttatctgctttgctttgaatatactgtag
||| |||| |||||||| || || ||||||||||||||||| ||||| || |||| ||||||| |||  |||  | ||| | ||        || || || | |   ||||||  | | | | |     ||        ||  | || ||  || | || |||  |||||  || | |   
ACAGTCTCCTACATGGCTGAGCGGGTGGTTGGCACTGGTTCCTTTGGGGTCGTTTTTCAGgtacttggaattgatcttgatatac-------cttgtgagcaattggcctttgggtaattttccagataat-------attgttctcatt-tttttatgttttattttgacaatgcag---