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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAATGTTTGCAAAACCGAAGCTGTTGCTGTTCACTGGTTGCAACATTCCCTCTATGATGTCACTGGCTCAGACACCAACACCTTGTGGCTCTTGCAGAGgtaggtgaagaaagggttttagttttaggtccatttcattcattcattcatttatttaattctattcactgcatggctttatatttatgcattggataat...

Basic information

species Glycine max
transcript GLYMA18G45220.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G45220.1 (Glycine max), 5'ss of exon 4
lower sequence: AT3G54220.1 (Arabidopsis thaliana), 5'ss of exon 1
TCAATGTTTGCAAAACCGAAGCTGTTGCTGTTCACTGGTTGCAACATTCCCTCTATGATGTCACTGGCTCAGACACCAACACCTTGTGGCTCTTGCAGAGgtagg-tgaagaaagggttttagt-----tttaggtccatttcattcattcattcatttatttaattctattc-actgcatggctttat-atttatgcattggataat------
|||||||  | ||||  |||||||| |||||||||||| | |||||||| || ||||||||||||||||| ||  |  ||||  | ||| |  | || |||||   | || |     ||||| |     ||||  |  |  | |||     |||   |     |  | | ||| |     ||||||| |   |||   |||||  |||      
TCAATGTGAGGAAAAGGGAAGCTGTGGCTGTTCACTGGCTTCAACATTCTCTTTATGATGTCACTGGCTCTGATGCACACACTCTCTGGTTACTCCAAAGgtaaaataaacattaccttttaatcactctttatctataaattattttaagattatataggaaagatatgttctaaaaagtggcttttttggttaatgattggggaatgaacag

upper sequence: GLYMA18G45220.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv08s0056g00050.t01 (Vitis vinifera), 5'ss of exon 1
TCAATGTTTGCAAAACCGAAGCTGTTGCTGTTCACTGGTTGCAACATTCCCTCTATGATGTCACTGGCTCAGACACCAACACCTTGTGGCTCTTGCAGAGgtaggtgaagaaagggttttagttttaggtccatttcattcattcattcatttatttaattct-attcactgca-tggctttatatttatgcattggataat-
|||||||  |||| |  || |||||||| || || |||||||| ||||||||||| || ||||| || || |||||||| ||  |||||||||||||||||||    |    |    |   | |      ||||||      ||    ||| ||   ||||   |  || |  | | ||  | |  ||   ||   |||  | 
TCAATGTGAGCAAGAGGGAGGCTGTTGCCGTCCATTGGTTGCAGCATTCCCTCTACGACGTCACAGGTTCCGACACCAATACGCTGTGGCTCTTGCAGAGgtaacccatactaatact---gctaacaccccattttccattttgccacatctaaaaaatttagagccagtatactagcagtttgattgaacaaatgatggtg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8284342|gb|BE021901.1|BE021901
EST:     CTCTATGATGTCACTGGCTCAGACACCAACACCTTGTGGCTCTTGCAGAG                         GCTGGCACCTAAAGTGGTGACTGTGGTGGAGCAGGACCTAAGCAACACTGG
genomic: CTCTATGATGTCACTGGCTCAGACACCAACACCTTGTGGCTCTTGCAGAGgtaggtgaag ... tgttatgcagGCTGGCACCTAAAGTGGTGACTGTGGTGGAGCAGGACCTAAGCAACACTGG