Sequence
atgc intronic sequence ATGC exonic sequenceACAGCTGAGATTGTTTCTGCAGTTTCCCATCTCCATGCAAATGGAATAATGCATAGGGATCTAAAGCCTGAAAATATCCTACTGGATGCTGATGGCCATGtactctgtcctccctccctcatgtttttcattgtgactgagaaacctgtagtaactgaacagttatttctttgttgatctactagg
Basic information
species | Glycine max |
transcript | GLYMA18G44520.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA18G44520.1 (Glycine max), 5'ss of exon 4
lower sequence: EFJ13401 (Selaginella moellendorffii), 5'ss of exon 3
-ACAGCTGAGATTGTTTCTGCAGTTTCCCATCTCCATGCAAATGGAATAATGCATAGGGATCTAAAGCCTGAAAATATCCTACTGGATGCTGATGGCCATGtactctgtcctccctccctcatgtttttcattgtgactgagaaacctgtagtaactgaacagttatttctttgttgatctactagg
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TGCGGCAGAGATTGTGAGCGCAGTGGCACATCTACACTCGAAAGGCATTGTACATAGGGATTTAAAGCCTGAAAATATTCTTCTCGACGCTGACGGCCATgtaagctactcg-----agtcgaggcactactcgaaatctaacactctggattgatggcacag------------------------
upper sequence: GLYMA18G44520.1 (Glycine max), 5'ss of exon 4
lower sequence: EFJ11886 (Selaginella moellendorffii), 5'ss of exon 4
-ACAGCTGAGATTGTTTCTGCAGTTTCCCATCTCCATGCAAATGGAATAATGCATAGGGATCTAAAGCCTGAAAATATCCTACTGGATGCTGATGGCCATGtactctgtcctccctccctcatgtttttcattgtgactgagaaacctgtagtaactgaacagttatttctttgttgatctactagg
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TGCAGCAGAGATTGTGAGCGCAGTGGCACATCTACACTCGAAAGGCATTGTACATAGGGATTTAAAGCCTGAAAATATTCTTCTCGACGCTGACGGCCATgtaagctactcgagtcgaggcactactcgaaatgtaac-----actctggattgatggcacag------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|254339363|gb|GR848080.1|GR848080EST: GCATAGGGATCTAAAGCCTGAAAATATCCTACTGGATGCTGATGGCCATG TTATGTTGACTGATTTTGGCTTAGCTAAACAATTTGAAGAGAGTACAAGAT
genomic: GCATAGGGATCTAAAGCCTGAAAATATCCTACTGGATGCTGATGGCCATGtactctgtcc ... atctactaggTTATGTTGACTGATTTTGGCTTAGCTAAACAATTTGAAGAGAGTACAAGAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACAGCTGAGATTGTTTCTGCAGTTTCCCATCTCCATGCAAATGGAATAATGCATAGGGATCTAAAGCCTGAAAATATCCTACTGGATGCTGATGGCCATGtactctgtcctccctccctcatgtttttcattgtgactgagaaacctgtagtaactgaacagttatttctttgttgatctactagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT