1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTTGCTTTCCCAACATGTTTATCAATCAACAACGTTGTCTGCCATTTCTCTCCACTAGCCAGTGATGAGGCCGTGTTGGAAGAAGGTGATATATTGAAAAtgtaagattttcaggacatgaatttgcgatgaaggggggggggggggatggagtcggtgatttctgctagtattctgaagttgatgtttgtttctttggttggttgca
species | Glycine max |
transcript | GLYMA18G43390.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TCCACTAGCCAGTGATGAGGCCGTGTTGGAAGAAGGTGATATGTTGAAAA TTGATATGGCATGCCATATAGATGGGTTCATTGCTGTGGTAGCTCACACCCEST: gi|192300664|gb|FG991076.1|FG991076
genomic: TCCACTAGCCAGTGATGAGGCCGTGTTGGAAGAAGGTGATATATTGAAAAtgtaagattt ... gttggttgcaGTGATATGGCATGCCATATAGATGGGTTCATTGCTGTGGTAGCTCACACCC
EST: TCCACTAGCCAGTGATGAGGCCGTGTTGGAAGAAGGTGATATATTGAAAA TTGATATGGCATGCCATATAGATGGGTTCATTGCTGTGGTAGCTCACACCCEST: gi|298170622|gb|HO019246.1|HO019246
genomic: TCCACTAGCCAGTGATGAGGCCGTGTTGGAAGAAGGTGATATATTGAAAAtgtaagattt ... gttggttgcaGTGATATGGCATGCCATATAGATGGGTTCATTGCTGTGGTAGCTCACACCC
EST: TCCACTAGCCAGTGATGAGGCCGTGTTGGAAGAAGGTGATATGTTGAAAA TTGATATGGCATGCCATATAGATGGGTTCATTGCTGTGGTAGCTCACACCCEST: gi|151398254|gb|EV268132.1|EV268132
genomic: TCCACTAGCCAGTGATGAGGCCGTGTTGGAAGAAGGTGATATATTGAAAAtgtaagattt ... gttggttgcaGTGATATGGCATGCCATATAGATGGGTTCATTGCTGTGGTAGCTCACACCC
EST: TCCACTAGCCAGTGATGAGGCCGTGTTGGAAGAAGGTGATATATTGAAAA TTGATATGGCATGCCATATAGATGGGTTCATTGCTGTGGTAGCTCACACCCEST: gi|208194888|gb|GD993085.1|GD993085
genomic: TCCACTAGCCAGTGATGAGGCCGTGTTGGAAGAAGGTGATATATTGAAAAtgtaagattt ... gttggttgcaGTGATATGGCATGCCATATAGATGGGTTCATTGCTGTGGTAGCTCACACCC
EST: AAGAAGGTGATATATTGAAAA TTGATATGGCATGCCATATAGATGGGTTCATTGCTGTGGTAGCTCACACCCEST: gi|14258932|gb|BG881831.1|BG881831
genomic: AAGAAGGTGATATATTGAAAAtgtaagattt ... gttggttgcaGTGATATGGCATGCCATATAGATGGGTTCATTGCTGTGGTAGCTCACACCC
EST: TCCACTAGCCAGTGATGAGGCCGTGTTGGAAGAAGGTGATATATTGAAAA TTGATATGGCATGCCATATAGATGGGTTCATTGCTGTGGTAGCTCACACCC
genomic: TCCACTAGCCAGTGATGAGGCCGTGTTGGAAGAAGGTGATATATTGAAAAtgtaagattt ... gttggttgcaGTGATATGGCATGCCATATAGATGGGTTCATTGCTGTGGTAGCTCACACCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGCTTTCCCAACATGTTTATCAATCAACAACGTTGTCTGCCATTTCTCTCCACTAGCCAGTGATGAGGCCGTGTTGGAAGAAGGTGATATATTGAAAAtgtaagattttcaggacatgaatttgcgatgaaggggggggggggggatggagtcggtgatttctgctagtattctgaagttgatgtttgtttctttggttggttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG