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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCCTCTCAGAGAACACTCGCATTCTACTTCTCAGTGCTCCTCCCATCAATGATGCAACAATTACCCCAAACAggttctgactgcaatagattttctatttgattgttataagttcacaaaaataatgctagattgatcaataaaatgatgcctagacttatgtccaagccat...

Basic information

species Glycine max
transcript GLYMA18G43040.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192312023|gb|FK004276.1|FK004276
EST:     TCTACTTCTCAGTGCTCCTCCCATCAATGACGCAACAATTACCCCAAACA                         GTGATGGGAAGCCATCAGGGACAAATGAAGCTTGTTGAATATATTCAGAGG
genomic: TCTACTTCTCAGTGCTCCTCCCATCAATGATGCAACAATTACCCCAAACAggttctgact ... agtgaacgcaGTGATGGGAAGCCATCAAGGACAAATGAAGCTTGTCGAATATATTCAGAGG
EST: gi|192325819|gb|FK018041.1|FK018041
EST:     TCTACTTCTCAGTGCTCCTCCCATCAATGATGCAACAATTACCCCAAACA                         GTGATGGGAAGCCATCAAGGACAAATGAAGCTTGTCGAATATATTCAGAGG
genomic: TCTACTTCTCAGTGCTCCTCCCATCAATGATGCAACAATTACCCCAAACAggttctgact ... agtgaacgcaGTGATGGGAAGCCATCAAGGACAAATGAAGCTTGTCGAATATATTCAGAGG
EST: gi|33390678|gb|CA853873.1|CA853873
EST:     TCTACTTCTCAGTGCTCCTCCCATCAATGATGCAACAATTACCCCAAACA                         GTGATGGGAAGCCATCAAGGACAAATGAAGCTTGTCGAATATATTCAGAGG
genomic: TCTACTTCTCAGTGCTCCTCCCATCAATGATGCAACAATTACCCCAAACAggttctgact ... agtgaacgcaGTGATGGGAAGCCATCAAGGACAAATGAAGCTTGTCGAATATATTCAGAGG
EST: gi|8282632|gb|BE020193.1|BE020193
EST:     TCTACTTCTCAGTGCTCCTCCCATCAATGATGCAACAATTACCCCAAACA                         GTGATGGGAAGCCATCAAGGACAAATGAAGCTTGTCGAATATATTCAGAGG
genomic: TCTACTTCTCAGTGCTCCTCCCATCAATGATGCAACAATTACCCCAAACAggttctgact ... agtgaacgcaGTGATGGGAAGCCATCAAGGACAAATGAAGCTTGTCGAATATATTCAGAGG
EST: gi|15662576|gb|BI699955.1|BI699955
EST:     TCTACTTCTCAGTGCTCCTCCCATCAATGATGCAACAATTACCCCAAACA                         GTGATGGGAAGCCATCAAGGACAAATGAAGCTTGTCGAATATATTCAGAGG
genomic: TCTACTTCTCAGTGCTCCTCCCATCAATGATGCAACAATTACCCCAAACAggttctgact ... agtgaacgcaGTGATGGGAAGCCATCAAGGACAAATGAAGCTTGTCGAATATATTCAGAGG
EST: gi|8283486|gb|BE021045.1|BE021045
EST:     TCTACTTCT-AGTGCTCCTCCCATCAATGATGCAACAATTACCCCAAACA                         GTGATGGGAAGCCATCAAGG
genomic: TCTACTTCTCAGTGCTCCTCCCATCAATGATGCAACAATTACCCCAAACAggttctgact ... agtgaacgcaGTGATGGGAAGCCATCAAGG
EST: gi|192325175|gb|FK017546.1|FK017546
EST:     TCTACTTCTCAGTGCTCCTCCCATCAATGATGCAACAATTACCCCAGACA                         GTGATGGGAAGCCATCAAGGACAAATGAAGCTTGTCGAATATATTCAGAGG
genomic: TCTACTTCTCAGTGCTCCTCCCATCAATGATGCAACAATTACCCCAAACAggttctgact ... agtgaacgcaGTGATGGGAAGCCATCAAGGACAAATGAAGCTTGTCGAATATATTCAGAGG
EST: gi|192312022|gb|FK004275.1|FK004275
EST:     TCTACTTCTCAGTGCTCCTCCCATCAATGACGCAACAATTACCCCAAACA                         GTGATGGGAAGCCATCAGGGACAAATGAAGCTTGTTGAATATATTCAGAGG
genomic: TCTACTTCTCAGTGCTCCTCCCATCAATGATGCAACAATTACCCCAAACAggttctgact ... agtgaacgcaGTGATGGGAAGCCATCAAGGACAAATGAAGCTTGTCGAATATATTCAGAGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGCCTCTCAGAGAACACTCGCATTCTACTTCTCAGTGCTCCTCCCATCAATGATGCAACAATTACCCCAAACAggttctgactgcaatagattttctatttgattgttataagttcacaaaaataatgctagattgatcaataaaatgatgcctagacttatgtccaagccat

- - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaataa