Sequence
atgc intronic sequence ATGC exonic sequenceATGGTGATTGATGATCGGTCAAAGGTTTGGGAAGACAAGGACCAGCCTAGGGTTCATGTTGTGCCTGCCTTTACTCCTTATTATGCTCCTCAAGCAGAGGtgtgggtttatgtatattactgcattttttaatttttttttctaaatattcatgatagagacactaatatattcttttctttattaga
Basic information
species | Glycine max |
transcript | GLYMA18G42790.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA18G42790.1 (Glycine max), 5'ss of exon 4
lower sequence: AT5G01270.1 (Arabidopsis thaliana), 5'ss of exon 4
-ATGGTGATTGATGATCGGTCAAAGGTTTGGGAAGACAAGGACCAGCCTAGGGTTCATGTTGTGCCTGCCTTTACTCCTTATTATGCTCCTCAAGCAGAGGtgtgggttta----tgtatattactgcattttttaatttttttttctaaatattcatgatagagacactaatatattcttttctttattaga---
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AATGGTCATTGATGACCGTATGAAGGTTTGGGAGGACAAGGATCAACCACGGGTTCATGTTGTTTCTGCATATCTTCCTTATTATGCTCCACAAGCAGAGgcatgtggttgctcttgcatttagttgtgaattaaattctgtatcacttaattttccaagtgggtatctaaccattttcgtatgcccatttatcag
upper sequence: GLYMA18G42790.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv08s0007g02130.t01 (Vitis vinifera), 5'ss of exon 4
-ATGGTGATTGATGATCGGTCAAAGGTTTGGGAAGACAAGGACCAGCCTAGGGTTCATGTTGTGCCTGCCTTTACTCCTTATTATGCTCCTCAAGCAGAGGtgtgggtttatgtatattactgcattttttaatttttttttctaaata--ttcat-gatagagacactaatat-attcttttctttattaga----
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AATGGTGATCGATGACCGTTTAAAGGTTTGGGAAGATAAGGATCAGCCGCGAGTCCATGTAGTACCACCATTCACTCCTTATTACGCTCCTCAGGCAGAGgtaataaattatgctgtctataagattgataattgaaaattgttacattatttcatcaagactggcactaatgtgatacatatatatttttgaatagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|9903165|gb|BE612133.1|BE612133EST: GTTGTGCCTGCCTTTACTCCTTATTATGCTCCTCAAGCAGAGA CGGCCAATGCTGTCCCAGTCCTATGTGTAGCAAGAAATGTTGCATGCAATG
genomic: GTTGTGCCTGCCTTTACTCCTTATTATGCTCCTCAAGCAGAGGtgtgggttta ... ctttattagaCGGCCAATGCTGTCCCAGTCCTATGTGTAGCAAGAAATGTTGCATGCAATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGGTGATTGATGATCGGTCAAAGGTTTGGGAAGACAAGGACCAGCCTAGGGTTCATGTTGTGCCTGCCTTTACTCCTTATTATGCTCCTCAAGCAGAGGtgtgggtttatgtatattactgcattttttaatttttttttctaaatattcatgatagagacactaatatattcttttctttattaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC