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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAGAAGGTACCCCTCTCCTTGGCACTTAGTCCAAGAATAATTTCGGAGGTAGCCCGGTTTAAGCCTGACATAATACATGCATCATCGCCAGGCATAATGgttgatctgcaattcctctatctccttatttgttaaattttggggatattatggatagtgtagtgtaactgtgtaaagacttatttgtgacacttcatatccaatgctggcttaatttcag

Basic information

species Glycine max
transcript GLYMA18G42540.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G42540.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv08s0007g01940.t01 (Vitis vinifera), 5'ss of exon 4
TCAGAAGGTACCCCTCTCCTTGGCACTTAGTCCAAGAATAATTTCGGAGGTAGCCCGGTTTAAGCCTGACATAATACATGCATCATCGCCAGGCATAATGgttgatctgcaattcctctatctccttatttgttaaattttggggatattatggatagtgtagtgtaactgtgtaaagacttatttgtgacacttcatatccaatgctggcttaatttcag
||  ||||| || || || ||||||||||| || |||||||| || ||||| ||||| ||||||||||| ||||||||||||||||| || || || |||||   | |  || || |   | |  || ||       |||||| |      || ||  | | |  | || |    ||  ||||        |  |  ||  |||   ||| |         
TCGAAAGGTTCCTCTTTCTTTGGCACTTAGCCCTAGAATAATCTCAGAGGTTGCCCGATTTAAGCCTGATATAATACATGCATCATCACCTGGAATTATGgtaattttctaactcatgcttatttttgttct-----ttttggag------tgcatgatat-gcattacgggcctaaatcttacaaacctaagcttttaggcaaaattggtt---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120494796|gb|EH222963.1|EH222963
EST:     TAGCCCGGTTTAAGCCTGACATAATACATGCATCATCGCCAGGCATAATG                         GTTTTTGGAGCTCTTATCATTGCAAAACTTTTGTGTGTTCCTATTGTCATG
genomic: TAGCCCGGTTTAAGCCTGACATAATACATGCATCATCGCCAGGCATAATGgttgatctgc ... ttaatttcagGTTTTTGGAGCTCTTATCATTGCAAAACTTTTGTGTGTTCCTATTGTCATG
EST: gi|120491418|gb|EH219585.1|EH219585
EST:     TAGCCCGGTTTAAGCCTGACATAATACATGCATCATCGCCAGGCATAATG                         GTTTTTGGAGCTCTTATCAT
genomic: TAGCCCGGTTTAAGCCTGACATAATACATGCATCATCGCCAGGCATAATGgttgatctgc ... ttaatttcagGTTTTTGGAGCTCTTATCAT