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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTAAGGCTGCTGGAGTGAAGCACATTGTGTTAGTAGGGTCTATGGGTGGAACAGATCTTAACCATCCTTTGAACAGCTTGGGTAATGGGAATATACTGgttagtaatgttttttcctttacttctaaactacctccttccataacattctgtcattgcttttatatgattagagcttgcaactcatcttaatgcaaaatgcaagtttggtgtaaatgcctaaatggatatgttttacttcccccatgccctttgatattcctcctttgataggaagaatgttgattgcag

Basic information

species Glycine max
transcript GLYMA18G39930.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G39930.2 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os03g60740.1 (Oryza sativa), 5'ss of exon 4
CTAAGGCTGCTGGAGTGAAGCACATTGTGTTAGTAGGGTCTATGGGTGGAACAGATCTTAACCATCCTTTGAACAGCTTGGGTAATGGGAATATACTGgttag-taatgttttttcct----ttacttctaaactacctccttccataacattctgtcattgcttttatatgattagagcttgcaactcatcttaatgcaaaatgcaagtttggtgtaaatgcctaaatggatatgttttacttcccccatgccctttgatattcctcctttgataggaagaatgttgattgcag
| || ||||||||||||||||| || ||| | || || || ||||| |||||| ||| |||||||||  |||||||| | || ||||| ||||||||||| || | |||   ||| ||     |  ||||| | ||  || | |   ||  || |    |     ||   | | |||| || | |  |  | |   |  |                                                                                               
CCAAAGCTGCTGGAGTGAAGCATATCGTGCTTGTGGGATCCATGGGAGGAACAAATCCTAACCATCCACTGAACAGCCTAGGCAATGGCAATATACTGgtaagctgatggagtttgctagttctttttctataataagtcatacagcaaactttttggttcaagctt---tcaatagaactggtagattgtttccctctat----------------------------------------------------------------------------------------------

upper sequence: GLYMA18G39930.2 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G068244_T01 (Zea mays), 5'ss of exon 4
CTAAGGCTGCTGGAGTGAAGCACATTGTGTTAGTAGGGTCTATGGGTGGAACAGATCTTAACCATCCTTTGAACAGCTTGGGTAATGGGAATATACTGgttagtaatgttttttcctttacttctaaactacctccttccataacattctgtcattgcttttatatgattagagcttgcaactcatcttaatgcaaaatgcaagtttggtgtaaatgcctaaatggatatgttttacttcccccatgccctttgatattcctcctttgataggaagaatgttgattgcag
|||| ||||||||||||||||| |||||| | || || |||||||| |||||| ||| |||||||||  |||||||| |||||||||| ||||||||||| ||  |   |||  |  || | |  |  | ||  |  | || ||  |   |   | |  | |   ||||||  || |  | ||  | |                                                                                                      
CTAAAGCTGCTGGAGTGAAGCATATTGTGCTGGTGGGATCTATGGGAGGAACAAATCCTAACCATCCGCTGAACAGCATGGGTAATGGCAATATACTGgtaagctaaaatttggctcttccat--aggcaactactattcacaaattgtagaagtgggatct---tgattattgcatatatctgctatag----------------------------------------------------------------------------------------------------

upper sequence: GLYMA18G39930.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv08s0007g00530.t01 (Vitis vinifera), 5'ss of exon 4
CTAAGGCTGCTGGAGTGAAGCACATTGTGTTAGTAGGGTCTATGGGTGGAACAGATCTTAACCATCCTTTGAACAGCTTGGGTAATGGGAATATACTGgttagtaatgttttttcctttacttcta---aactacctcct-tccataacattctgtcattgcttttatatgattagagcttgcaactcatcttaatgcaaaatgcaagtttggtgtaaatgcctaaatggatatgttttacttcccccatgccctttgatattcctcctttgataggaagaatgttgattgcag
| ||  |||| ||||||||||| |||||||| || ||||||||||| |||||||| || |||||||| |||||||||||||| ||||||||||| |||||| || ||  |||||  |||   |  |   || ||| | || ||  ||||| | ||     | | | || |   |  |  |     ||||| || ||| |   |                                                                                           
CAAAAACTGCAGGAGTGAAGCATATTGTGTTGGTTGGGTCTATGGGAGGAACAGACCTAAACCATCCCTTGAACAGCTTGGGAAATGGGAATATCCTGgtttgtgattcttttttatttttgttcagaaaattacttactctctttaacaatttg-----ggtgtcatgtttgtgaaaatgagttctcatttttatgaatgct-------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208333137|gb|GE127414.1|GE127414
EST:     GAACAGATCTTAACCATCCTTTGAACAGCTTGGGTAATGGGAATATACTG                         GTTTGGAAAAGGAAGGCTGAGCAATATCTGGCTGATTCCGGCATCCCATAT
genomic: GAACAGATCTTAACCATCCTTTGAACAGCTTGGGTAATGGGAATATACTGgttagtaatg ... ttgattgcagGTTTGGAAAAGGAAGGCTGAGCAATATCTGGCTGATTCCGGCATCCCATAT
EST: gi|151397652|gb|EV267525.1|EV267525
EST:     GAACAGATCTTAACCATCCTTTGAACAGCTTGGGTAATGGGAATATACTG                         GTTTGGAAAAGGAAGGCTGAGCAATATCTGGCTGATTCCGGCATCCCATAT
genomic: GAACAGATCTTAACCATCCTTTGAACAGCTTGGGTAATGGGAATATACTGgttagtaatg ... ttgattgcagGTTTGGAAAAGGAAGGCTGAGCAATATCTGGCTGATTCCGGCATCCCATAT
EST: gi|208106222|gb|GD905149.1|GD905149
EST:     GAACAGATCTTAACCATCCTTTGAACAGCTTGGGTAATGGGAATATACTG                         GTTTGGAAAAGGAAGGCTGAGCAATATCTGGCTGATTCCGGCATCCCATAT
genomic: GAACAGATCTTAACCATCCTTTGAACAGCTTGGGTAATGGGAATATACTGgttagtaatg ... ttgattgcagGTTTGGAAAAGGAAGGCTGAGCAATATCTGGCTGATTCCGGCATCCCATAT
EST: gi|58019388|gb|CX706130.1|CX706130
EST:     GAACAGATCTTAACCATCCTTTGAACAGCTTGGGTAATGGGAATATACTG                         GTTTGGAAAAGGAAGGCTGAGCAATATCTGGCTGATTCCGGCATCCCATAT
genomic: GAACAGATCTTAACCATCCTTTGAACAGCTTGGGTAATGGGAATATACTGgttagtaatg ... ttgattgcagGTTTGGAAAAGGAAGGCTGAGCAATATCTGGCTGATTCCGGCATCCCATAT
EST: gi|208098334|gb|GD894755.1|GD894755
EST:     CTTAACCATCCTTTGAACAGCTTGGGTAATGGGAATATATTG                         GTTTGGAAAAGGAAGGCTGAGCAATATCTGGCTGATTCCGGCATCCCATAT
genomic: CTTAACCATCCTTTGAACAGCTTGGGTAATGGGAATATACTGgttagtaatg ... ttgattgcagGTTTGGAAAAGGAAGGCTGAGCAATATCTGGCTGATTCCGGCATCCCATAT
EST: gi|7028397|gb|AW458180.1|AW458180
EST:     GAACAGATCTTAACCATCCTTTGAACAGCTTGGGTAATGGGAATATACTG                         GTTTGGAAAAGGAAGGCTGAGCAATATCTGGCTGATTCCGGCATCCCATAT
genomic: GAACAGATCTTAACCATCCTTTGAACAGCTTGGGTAATGGGAATATACTGgttagtaatg ... ttgattgcagGTTTGGAAAAGGAAGGCTGAGCAATATCTGGCTGATTCCGGCATCCCATAT
EST: gi|193443566|gb|FK409256.1|FK409256
EST:     GAACGGACCTTAACCATCCTTTGAACAGCTTGGGTAATGGGAATATATTG                         GTTTGGAAAAGGAAGGCTGAGCAATATCTGGCTGATTCCGGCATCCCATAT
genomic: GAACAGATCTTAACCATCCTTTGAACAGCTTGGGTAATGGGAATATACTGgttagtaatg ... ttgattgcagGTTTGGAAAAGGAAGGCTGAGCAATATCTGGCTGATTCCGGCATCCCATAT
EST: gi|213620500|gb|DB957344.1|DB957344
EST:     GAACAGATCTTAACCATCCTTTGAACAGCTTGGGTAATGGGAATATACTG                         GTTTGGAAAAGGAAGGCTGAGCAATATCTGGCTGATTCCGGCATCCCATAT
genomic: GAACAGATCTTAACCATCCTTTGAACAGCTTGGGTAATGGGAATATACTGgttagtaatg ... ttgattgcagGTTTGGAAAAGGAAGGCTGAGCAATATCTGGCTGATTCCGGCATCCCATAT
EST: gi|208279633|gb|GE081260.1|GE081260
EST:     CAGATCTTAACCATCCTTTGAACAGCTTGGGTAATGGGAATATACTG                         GTTTGGAAAAGGAAGGCTGAGCAATATCTGGCTGATTCCGGCATCCCATAT
genomic: CAGATCTTAACCATCCTTTGAACAGCTTGGGTAATGGGAATATACTGgttagtaatg ... ttgattgcagGTTTGGAAAAGGAAGGCTGAGCAATATCTGGCTGATTCCGGCATCCCATAT
EST: gi|208252188|gb|GE046592.1|GE046592
EST:     GAACGGACCTTAACCATCCTTTGAACAGCTTGGGTAATGGGAATATATTG                         GTTTGGAAAAGGAAGGCTGAGCAATATCTGGCTGATTCCGGCATCCCATAT
genomic: GAACAGATCTTAACCATCCTTTGAACAGCTTGGGTAATGGGAATATACTGgttagtaatg ... ttgattgcagGTTTGGAAAAGGAAGGCTGAGCAATATCTGGCTGATTCCGGCATCCCATAT
EST: gi|58022869|gb|CX709610.1|CX709610
EST:     GAACAGATCTTAACCATCCTTTGAACAGCTTGGGTAATGGGAATATACTG                         GTTTGGAAAAGGAAGGCTGAGCAATATCTGGCTGATTCCGGCATCCCATAT
genomic: GAACAGATCTTAACCATCCTTTGAACAGCTTGGGTAATGGGAATATACTGgttagtaatg ... ttgattgcagGTTTGGAAAAGGAAGGCTGAGCAATATCTGGCTGATTCCGGCATCCCATAT
EST: gi|193581596|gb|FK538299.1|FK538299
EST:     GAACGGACCTTAACCATCCTTTGAACAGCTTGGGTAATGGGAATATATTG                         GTTTGGAAAAGGAAGGCTGAGCAATATCTGGCTGATTCCGGCATCCCATAT
genomic: GAACAGATCTTAACCATCCTTTGAACAGCTTGGGTAATGGGAATATACTGgttagtaatg ... ttgattgcagGTTTGGAAAAGGAAGGCTGAGCAATATCTGGCTGATTCCGGCATCCCATAT
EST: gi|58016336|gb|CX703078.1|CX703078
EST:     GAACAGATCTTAACCATCCTTTGAACAGCTTGGGTAATGGGAATATACTG                         GTTTGGAAAAGGAAGGCTGAGCAATATCTGGCTGATTCCGGCATCCCATAT
genomic: GAACAGATCTTAACCATCCTTTGAACAGCTTGGGTAATGGGAATATACTGgttagtaatg ... ttgattgcagGTTTGGAAAAGGAAGGCTGAGCAATATCTGGCTGATTCCGGCATCCCATAT
EST: gi|208110158|gb|GD907246.1|GD907246
EST:     GAACAGATCTTAACCATCCTTTGAACAGCTTGGGTAATGGGAATATACTG                         GTTTGGAAAAGGAAGGCTGAGCAATATCTGGCTGATTCCGGCATCCCATAT
genomic: GAACAGATCTTAACCATCCTTTGAACAGCTTGGGTAATGGGAATATACTGgttagtaatg ... ttgattgcagGTTTGGAAAAGGAAGGCTGAGCAATATCTGGCTGATTCCGGCATCCCATAT
EST: gi|17023106|gb|BM094140.1|BM094140
EST:     GAACAGATCTTAACCATCCTTTGAACAGCTTGGGTAATGGGAATATACTG                         GTTTGGAAAAGGAAGGCTGAGCAATAT
genomic: GAACAGATCTTAACCATCCTTTGAACAGCTTGGGTAATGGGAATATACTGgttagtaatg ... ttgattgcagGTTTGGAAAAGGAAGGCTGAGCAATAT
EST: gi|8825861|gb|BE209591.1|BE209591
EST:     GAACAGATCTTAACCATCCTTTGAACAGCTTGGGTAATGGGAATATACTG                         GTTTGGAAAAGGAAGGCTGAGCAATATCTGGCTGATTCCGGCATCCCATAT
genomic: GAACAGATCTTAACCATCCTTTGAACAGCTTGGGTAATGGGAATATACTGgttagtaatg ... ttgattgcagGTTTGGAAAAGGAAGGCTGAGCAATATCTGGCTGATTCCGGCATCCCATAT
EST: gi|58019799|gb|CX706541.1|CX706541
EST:     GAACAGATCTTAACCATCCTTTGAACAGCTTGGGTAATGGGAATATACTG                         GTTTGGAAAAGGAAGGCTGAGCAATATCTGGCTGATTCCGGCATCCCATAT
genomic: GAACAGATCTTAACCATCCTTTGAACAGCTTGGGTAATGGGAATATACTGgttagtaatg ... ttgattgcagGTTTGGAAAAGGAAGGCTGAGCAATATCTGGCTGATTCCGGCATCCCATAT
EST: gi|192327079|gb|FK015471.1|FK015471
EST:     AACAGATCTTAACCATCCTTTGAACAGCTTGGGTAATGGGGAATATACTG                         GTTTGGAAAAGGAAGGCTGAGCAATATCTGGCTGATTCCGGCATCCCATAT
genomic: AACAGATCTTAACCATCCTTTGAACAGCTTGGGTAATGGG-AATATACTGgttagtaatg ... ttgattgcagGTTTGGAAAAGGAAGGCTGAGCAATATCTGGCTGATTCCGGCATCCCATAT