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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCAGACTCTCGAGTTTGCCCATCCCACATTCTGGATTTCAATCCGGGTGAAGCCTTTGTGGTCCGAAATATCGCCAACATGGTTCCACCATATGACAAGgtttaatattaatatgtctatcaaatatttgacttatatcatatgacaaattaaatgtcatgaacactaaccttatttcaaatttgtcgtcaaatgtcatccgtttaatttactcgcacttttgttgtttcag

Basic information

species Glycine max
transcript GLYMA18G19080.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G19080.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv01s0127g00720.t01 (Vitis vinifera), 5'ss of exon 5
CTCAGACTCTCGAGTTTGCCCATCCCACATTCTGGATTTCAATCCGGGTGAAGCCTTTGTGGTCCGAAATATCGCCAACATGGTTCCACCATATGACAAGgtttaatattaatatgtctatcaaatatttgacttatatcatatgacaaattaaat--gtcatgaacactaaccttatttcaaatttgtcgtcaaatgtcatccgtttaatttactcgcacttttgttgtttcag
||||||||||||||||||||| || || || ||||||||  | || || || || ||| |||||||||| || || ||||||||||| ||||||||  ||||      | || |   | |   |||||||   |  | |  | |   |  ||  |   ||| || | |  ||  || | |     || |  |   |   |||   || |||                        
CTCAGACTCTCGAGTTTGCCCTTCACATATCCTGGATTTTCAGCCAGGGGAGGCATTTATGGTCCGAAACATTGCGAACATGGTTCCGCCATATGATCAGgtcc----taaaaaaccccactcaatatttttttactctgtttttgtattttgtacaggtcttggaaatgaaagttctcta----ttataattgcacagcat---ttcaat------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15815470|gb|BI787745.1|BI787745
EST:     AAGCCTTTGTGGTCCGAAATATCGCCAACATGGTTCCACCATATGACAAG                         ACCAAGTATTCAGGAACAGGGGCGGCCATTGAATATGCTGTCGTACATTTA
genomic: AAGCCTTTGTGGTCCGAAATATCGCCAACATGGTTCCACCATATGACAAGgtttaatatt ... gttgtttcagACCAAGTATTCAGGAACAGGGGCGGCCATTGAATATGCTGTCGTACATTTA