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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGTATCCCAGACAAAGAATATGAATCAGGGCCAATCATACTTCATTTGGATTCTTTGGGTCTTCACTCTAGTAAATCAGTTTTTGATAATATTAAAAGgtgagattaaagaagtgcttgtatctcatgttacatttccatttcatccatgcaacgataatttgttcaaacacatcttgccacttcactgctattctgc...

Basic information

species Glycine max
transcript GLYMA18G18950.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G18950.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv01s0026g00090.t01 (Vitis vinifera), 5'ss of exon 3
TTTGTATCCCAGACAAAGAATATGAATCAGGGCCAATCATACTTCATTTGGATTCTTTGGGTCTTCACTCTAGTAAATCAGTTTTTGATAATATTAAAAGgtgagattaaagaagtgcttgtatctcatgttacatttccatttcatccatgcaacgataatttgttcaaacacatcttgccacttcactgctattctgc---
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TTTGTATCCCAGACAAGGAAGATGAAGCAGGGCCGATCATACTTCATTTGGATTCATTGGGTTTGCACTATAGTAGACCAATTTTTGATGATATTAAAAGgtgagacaaaagaggcccatgtcaaaattaacaaatatt-atttgatttactgaataa-atgttgtggtaattc-taaaactaagtagtttttagtcaatggt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7692889|gb|AW760988.1|AW760988
EST:     GATTCTTTGGGTCTTCACTCTAGTAAATCAGTTTTTGATAATATTAAAAG                         CTATTTGATTGAAGAAAAGAACTATATGGATCGAGAAGATGTGTCTTTAGA
genomic: GATTCTTTGGGTCTTCACTCTAGTAAATCAGTTTTTGATAATATTAAAAGgtgagattaa ... cgctgtgtagCTATTTGATTGAAGAAAAGAACTATATGGATCGAGAAGATGTGTCTTTAGA