Sequence
atgc intronic sequence ATGC exonic sequenceCACTGCCGTGGAGATTTGGCCGTCAAAGTGTTCTCAATGCCCTTAAAGATTCCCTTTGTCGACTAGGACTGACTTCAGTGGATCTTTATCAGCTACATTGgtcagtactttatgagcctgtcgaatgatattattttatctgataacactttgttgataatgtaatttcttgcttttcag
Basic information
species | Glycine max |
transcript | GLYMA18G14510.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA18G14510.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G06690.1 (Arabidopsis thaliana), 5'ss of exon 4
CACTGCCGTGGAGATTTGGCCGTCAAAGTGTTCTCAATGCCCTTAAAGATTCCCTTTGTCGACTAGGACTGACTTCAGTGGATCTTTATCAGCTACATTGgtcagtactttatgagcctgtcgaatgatattattttatctgataacactttgttgataatgtaatttcttgcttttcag
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CATTGCCATGGCGATTTGGTCGTGAAAGTGTTGTCACTGCCCTTAAAGATTCCCTTTCCCGGCTTGAGCTTTCATCTGTTGATCTCTATCAACTGCATTGgtatgcacccctaattcatgttggagtaaacaacactagaaggtaacaatc---tcactattttcttaattatatttcag
upper sequence: GLYMA18G14510.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv12s0028g01100.t01 (Vitis vinifera), 5'ss of exon 4
CACTGCCGTGGAGATTTGGCCGTCAAAGTGTTCTCAATGCCCTTAAAGATTCCCTTTGTCGACTAGGACTGACTTCAGTGGATCTTTATCAGCTACATTGgtcagtactttatgagcctgtcgaatgatat-tatttta---tctgataacactttgttgataatgtaatttcttgc-----ttttcag
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CTTTACCATGGAGGTTTGGACGTCAGAGTGTAATCACTGCCCTTAAGGATTCCCTATGTCGCCTTGGACTTTTGTCAGTGGATCTCTATCAACTTCATTGgtcagtgctttatgagcctttatactaccatctatctgagtttctgtcaaagaaaaatagctaatcaaagtgtctgtaccaattttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|12690416|gb|BG156752.1|BG156752EST: TCCCTTTGTCGACTAGGACTGACTTCAGTGGATCTTTATCAGCTACATTG GCCTGGAGTTTGGGGAAATGAAG
genomic: TCCCTTTGTCGACTAGGACTGACTTCAGTGGATCTTTATCAGCTACATTGgtcagtactt ... tgcttttcagGCCTGGAGTTTGGGGAAATGAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CACTGCCGTGGAGATTTGGCCGTCAAAGTGTTCTCAATGCCCTTAAAGATTCCCTTTGTCGACTAGGACTGACTTCAGTGGATCTTTATCAGCTACATTGgtcagtactttatgagcctgtcgaatgatattattttatctgataacactttgttgataatgtaatttcttgcttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT