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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCAGTGGAACTCGGAGTTGGTGGTGTTCCCAATCGTTTTTTGGGAATTACTCCTTCTTATTTGTGGCAAACTCAGCATCAAAAAGCACCATTATCCGTGgtatactatgtgtaacaacatatgaaagtcggcttctaagaatgctttttctgtggtggatttttgttatgtgattaactgttatgttttttaattattgacacattaacaatatctttag

Basic information

species Glycine max
transcript GLYMA18G11000.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G11000.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv19s0090g00440.t01 (Vitis vinifera), 5'ss of exon 4
TCCAGTGGAACTCGGAGTTGGTGGTGTTCCCAATCGTTTTTTGGGAATTACTCCTTCTTATTTGTGGCAAACTCAGCATCAAAAAGCACCATTATCCGTGgtatactat---gtgtaacaacatatgaaagtcggcttctaagaatgctttttctgtggtggatttttgttatgtgattaactgttatgttttttaattattgacacattaacaatatctttag
| ||   ||||  | |||||||||||||||||| || ||| | ||||| || ||| ||||||| |||||||||||||  ||| || |||| |||||  ||||||  |||    | ||   | | |  |      |||| ||| || | | ||  | |     ||| || |   || ||  ||    |||    ||| | | |                      
TACATCAGAACCTGAAGTTGGTGGTGTTCCCAACCGCTTTCTAGGAATAACACCTGCTTATTTATGGCAAACTCAGCTCCAACAAACACCCTTATCAATGgtatgatattccatatagtgataaaatatgaaatgcttataataaggttcttgttttctgaaattattatc-cgt-atcgacctgcatgagggttactgaat----------------------