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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTGTAGCATCTCACCCTGATACAAGGATGCTATTCCTCAATGgtattgtcactttcctcattcatgttaaggactttgaacttctgtctgattctgtattgatcaactttgtgttacatgttctgatagtgatagaattagc...

Basic information

species Glycine max
transcript GLYMA18G10400.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16105005|gb|BI892745.1|BI892745
EST:     TGTGTAGCATCTCACCCTGATACAAGGATGCTATTCCTCAATG                         CTCATATACCTCTATATCTGTATCCCTTCCTTAATACAACAAGCAAGTCAA
genomic: TGTGTAGCATCTCACCCTGATACAAGGATGCTATTCCTCAATGgtattgtcac ... tcctttgcagCTCATATACCTCTATATCTGTATCCCTTCCTTAATACAACAAGCAAGTCAA
EST: gi|4290433|gb|AI438073.1|AI438073
EST:     TGTGTAGCATCTCACCCTGATACAAGGATGCTATTCCTCAATG                         CTCATATACCTCTATATCTGTATCCCTTCCTTTATACAACAAGCAAGTCAA
genomic: TGTGTAGCATCTCACCCTGATACAAGGATGCTATTCCTCAATGgtattgtcac ... tcctttgcagCTCATATACCTCTATATCTGTATCCCTTCCTTAATACAACAAGCAAGTCAA
EST: gi|27426250|gb|CA937770.1|CA937770
EST:     TGTGTAGCATCTCACCCTGATACAAGGATGCTATTCCTCAATG                         CTCATATACCTCTATATCTGTATCCCTTCCTTAATACAACAAGCAAGTCAA
genomic: TGTGTAGCATCTCACCCTGATACAAGGATGCTATTCCTCAATGgtattgtcac ... tcctttgcagCTCATATACCTCTATATCTGTATCCCTTCCTTAATACAACAAGCAAGTCAA
EST: gi|20075320|gb|BQ094111.1|BQ094111
EST:     TGTGTAGCATCTCACCCTGATACAAGGATGCTATTCCTCAATG                         CTCATATACCTCTATATCTGTATCCCTTCCTTAATACAACAAGCAAGTCAA
genomic: TGTGTAGCATCTCACCCTGATACAAGGATGCTATTCCTCAATGgtattgtcac ... tcctttgcagCTCATATACCTCTATATCTGTATCCCTTCCTTAATACAACAAGCAAGTCAA
EST: gi|209707752|gb|BW683644.1|BW683644
EST:     TGTGTAGCATCTCACCCTGATACAAGGATGCTATTCCTCAATG                         CTCATATACCTCTATATCTGTATCCCTTCCTTAATACAACAAGCAAGTCAA
genomic: TGTGTAGCATCTCACCCTGATACAAGGATGCTATTCCTCAATGgtattgtcac ... tcctttgcagCTCATATACCTCTATATCTGTATCCCTTCCTTAATACAACAAGCAAGTCAA
EST: gi|15816131|gb|BI788406.1|BI788406
EST:     TGTGTAGCATCTCACCCTGATACAAGGATGCTATTCCTCAATG                         CTCATATACCTCTATATCTGTATCCCTTCCTTAATACAACAAGCAAGTCAA
genomic: TGTGTAGCATCTCACCCTGATACAAGGATGCTATTCCTCAATGgtattgtcac ... tcctttgcagCTCATATACCTCTATATCTGTATCCCTTCCTTAATACAACAAGCAAGTCAA
EST: gi|19053276|gb|BM731943.1|BM731943
EST:     TGTGTAGCATCTCACCCTGATACAAGGATGCTATTCCTCAATG                         CTCATATACCTCTATATCTGTATCCCTTCCTTAATACAACAAGCAAGTCAA
genomic: TGTGTAGCATCTCACCCTGATACAAGGATGCTATTCCTCAATGgtattgtcac ... tcctttgcagCTCATATACCTCTATATCTGTATCCCTTCCTTAATACAACAAGCAAGTCAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGTGTAGCATCTCACCCTGATACAAGGATGCTATTCCTCAATGgtattgtcactttcctcattcatgttaaggactttgaacttctgtctgattctgtattgatcaactttgtgttacatgttctgatagtgatagaattagc

- - - - - - - - - - - - AGGATG