1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AAAAGCCGAAGTGGACAACAAGGATTTTCTATGCTGGAGTAGCTGTGCTGTTCATATTACTGCTGAGGCATCATGCACCCGATGAAGCTGCCAGAGCAAGgtaagtccatagttgatgaaatttatcctttcactttcttgctaagaataatcatatgctcaaactctgcttaatttcctttctagttggatctataaacccataaagggaaaactgtttgtagtttgtctttctaactgttacaacatgttgctttgcag
species | Glycine max |
transcript | GLYMA18G07900.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTCATATTACTGCTGAGGCATCATGCACCCGATGAAGCTGCCAGAGCAAG GTACCAGAAGAGGGTATCTAACATCATTGATGATGTTCTTGAATGGTCTCCEST: gi|7796768|gb|AW782162.1|AW782162
genomic: TTCATATTACTGCTGAGGCATCATGCACCCGATGAAGCTGCCAGAGCAAGgtaagtccat ... tgctttgcagGTACCAGAAGAGGGTATCTAACATCATTGATGATGTTCTTGAATGGTCTCC
EST: TTCATATTACTGCTGAGGCATCATGCACCCGATGAAGCTGCCAGAGCAAG GTACCAGAAGAGGGTATCTAACATCATTGATGATGTTCTTGAATGGTCTCCEST: gi|193566581|gb|FK525060.1|FK525060
genomic: TTCATATTACTGCTGAGGCATCATGCACCCGATGAAGCTGCCAGAGCAAGgtaagtccat ... tgctttgcagGTACCAGAAGAGGGTATCTAACATCATTGATGATGTTCTTGAATGGTCTCC
EST: TTCATATTACTGCTGAGGCATCATGCACCCGATGAAGCTGCCAGGGCAAG GTACCAGAAGAGGGTAT
genomic: TTCATATTACTGCTGAGGCATCATGCACCCGATGAAGCTGCCAGAGCAAGgtaagtccat ... tgctttgcagGTACCAGAAGAGGGTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAAGCCGAAGTGGACAACAAGGATTTTCTATGCTGGAGTAGCTGTGCTGTTCATATTACTGCTGAGGCATCATGCACCCGATGAAGCTGCCAGAGCAAGgtaagtccatagttgatgaaatttatcctttcactttcttgctaagaataatcatatgctcaaactctgcttaatttcctttctagttggatctataaacccataaagggaaaactgtttgtagtttgtctttctaactgttacaacatgttgctttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG