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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTACAGAGAAAGTTTACAAGAATCTAGACAACATGACAAGAATGATGAGATTCACTCTTCCTTTCCCCATCTTTGCATACCCCTTTTATTTggtgagaccctctttttccagaatgacagcattattttactatatagtacctcaatttttatatttctaaaattttgaattcttgaaattgaaaggaaaggactttattgggtctagcatctcactctctctttgtgatatgaaccatatatttca

Basic information

species Glycine max
transcript GLYMA18G06950.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193712128|gb|FK648381.1|FK648381
EST:     ATGATGAGATTCACTCTTCCTTTCCCCATCTTTGCATACCCCTTTTATTT                         GTGGAGCAGAAGCCCTGGAAAAGAAGGCTCTCATTTCAACCCTTAACAGCA
genomic: ATGATGAGATTCACTCTTCCTTTCCCCATCTTTGCATACCCCTTTTATTTggtgagaccc ... atatatttcaGTGGAGCAGAAGCCCTGGAAAAGAAGGCTCTCATTTCAACCCTTA-CAGCA
EST: gi|193495996|gb|FK461936.1|FK461936
EST:     ATGATGAGATTCACTCTTCCTTTCCCCATCTTTGCATACCCCTTTTATTT                         GTGGAGCAGAAGCCCTGGAAAAGAAGGCTCTCATTTCAACCCTTACAGCAA
genomic: ATGATGAGATTCACTCTTCCTTTCCCCATCTTTGCATACCCCTTTTATTTggtgagaccc ... atatatttcaGTGGAGCAGAAGCCCTGGAAAAGAAGGCTCTCATTTCAACCCTTACAGCAA
EST: gi|193301619|gb|FK265560.1|FK265560
EST:     ATGATGAGATTCACTCTTCCTTTCCCCATCTTTGCATACCCCTTTTATTC                         GTGGAGCAGAAGCCCTGGAAAAGAAGGCTCTCATTTCAACCCTTACAGCAA
genomic: ATGATGAGATTCACTCTTCCTTTCCCCATCTTTGCATACCCCTTTTATTTggtgagaccc ... atatatttcaGTGGAGCAGAAGCCCTGGAAAAGAAGGCTCTCATTTCAACCCTTACAGCAA