1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GAGCAGACACCTTGGACCCTGCTCTGTTGCGTCCTGGAAGGCTTGATCGTAAAATTGAGTTCCCTTTGCCTGATAGACGCCAAAAGAGGCTCGTATTTCAggcaagtcttttggctattttatttggtttactggacatcttatattctgagtgacaaatttcggtttgttttgaagaccttttcagtgtcttttatgttgaaaaatttaagtagtttattttcagctgattgctaacctattgtttgatggtttgatca
species | Glycine max |
transcript | GLYMA18G05730.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AAAATTGAGTTCCCTTTGCCTGATANACGCCAAAAGAGGCTCGTATTTCA GGTTTGCACAGCCAAAATGAACTTGAGTGATGAGGTAGACCTAGAGGATTAEST: gi|58022279|gb|CX709020.1|CX709020
genomic: AAAATTGAGTTCCCTTTGCCTGATAGACGCCAAAAGAGGCTCGTATTTCAggcaagtctt ... ggtttgatcaGGTTTGCACAGCCAAAATGAACTTGAGTGATGAGGTAGACCTAGAGGATTA
EST: AAAATTGAG-TCCCCTTGCCTGATAGACGCCAAAAGAGGCTCGTATTTCA GGTTTGCACAGCCAAAATGAACTTGAGTGATGAGGTAGACCTAGAGGATTAEST: gi|208243697|gb|GE036996.1|GE036996
genomic: AAAATTGAGTTCCCTTTGCCTGATAGACGCCAAAAGAGGCTCGTATTTCAggcaagtctt ... ggtttgatcaGGTTTGCACAGCCAAAATGAACTTGAGTGATGAGGTAGACCTAGAGGATTA
EST: AAAATTGAGTTCCCTTTGCCTGATAGACGCCAAAAGAGGCTCGTATTTCA GGTTTGCACAGCCAAAATGAACTTGAGTGATGAGGTAGACCTAGAGGATTAEST: gi|7146493|gb|AW508415.1|AW508415
genomic: AAAATTGAGTTCCCTTTGCCTGATAGACGCCAAAAGAGGCTCGTATTTCAggcaagtctt ... ggtttgatcaGGTTTGCACAGCCAAAATGAACTTGAGTGATGAGGTAGACCTAGAGGATTA
EST: AAAATTGAGTTCCCTTTGCCTGATAGACGCCAAAAGAGGCTCGTATTTCA GGTTTGCACAGCCAAAATGAACTTGAGTGATGAGGTAGACCTAGAGGATTAEST: gi|18041397|gb|BM309691.1|BM309691
genomic: AAAATTGAGTTCCCTTTGCCTGATAGACGCCAAAAGAGGCTCGTATTTCAggcaagtctt ... ggtttgatcaGGTTTGCACAGCCAAAATGAACTTGAGTGATGAGGTAGACCTAGAGGATTA
EST: AAAATTGAGTTCCCTTTGCCTGATAGACGCCAAAAGAGGCTCGTATTTCA CGTTTGCACAGCCAAAATGAACTTGAGTGATGAGGTAGACCTAGAGGATTAEST: gi|192313767|gb|FK007639.1|FK007639
genomic: AAAATTGAGTTCCCTTTGCCTGATAGACGCCAAAAGAGGCTCGTATTTCAggcaagtctt ... ggtttgatcaGGTTTGCACAGCCAAAATGAACTTGAGTGATGAGGTAGACCTAGAGGATTA
EST: AAAATTGAGTTCCCTTTGCCTGATAGACGCCAAAAGAGGCTCGTATTTCA GGTTTGCACAGCCAAAATGAACTTGAGTGATGAGGTAGACCTAGAGGATTAEST: gi|6848666|gb|AW350956.1|AW350956
genomic: AAAATTGAGTTCCCTTTGCCTGATAGACGCCAAAAGAGGCTCGTATTTCAggcaagtctt ... ggtttgatcaGGTTTGCACAGCCAAAATGAACTTGAGTGATGAGGTAGACCTAGAGGATTA
EST: AAAGAGGCTCGTATTTCA GGTTTGCACAGCCAAAATGAACTTGAGTGATGAGGTAGACCTAGAGGATTAEST: gi|192312053|gb|FK003844.1|FK003844
genomic: AAAGAGGCTCGTATTTCAggcaagtctt ... ggtttgatcaGGTTTGCACAGCCAAAATGAACTTGAGTGATGAGGTAGACCTAGAGGATTA
EST: AAAATTGAGTTCCCTTTGCCTGATAGACGCCAAAAGAGGCTCGTATTTCA GGTTTGCACAGCCAAAATGAACTTGAGTGATGAGGTAGACCTAGAGGATTAEST: gi|4396236|gb|AI495233.1|AI495233
genomic: AAAATTGAGTTCCCTTTGCCTGATAGACGCCAAAAGAGGCTCGTATTTCAggcaagtctt ... ggtttgatcaGGTTTGCACAGCCAAAATGAACTTGAGTGATGAGGTAGACCTAGAGGATTA
EST: AAAGAGGCTCGTATTTCA GGTTTGCACAGCCAAAATGAACTTGAGTGATGAGGTAGACCTAGAGGATTAEST: gi|192313766|gb|FK007638.1|FK007638
genomic: AAAGAGGCTCGTATTTCAggcaagtctt ... ggtttgatcaGGTTTGCACAGCCAAAATGAACTTGAGTGATGAGGTAGACCTAGAGGATTA
EST: AAAATTGAGTTCCCTTTGCCTGATAGACGCCAAAAGAGGCTCGTATTTCA GGTTTGCACAGCCAAAATGAACTTGAGTGATGAGGTAGACCTAGAGGATTAEST: gi|16342518|gb|BI968113.1|BI968113
genomic: AAAATTGAGTTCCCTTTGCCTGATAGACGCCAAAAGAGGCTCGTATTTCAggcaagtctt ... ggtttgatcaGGTTTGCACAGCCAAAATGAACTTGAGTGATGAGGTAGACCTAGAGGATTA
EST: AAAATTGAGTTCCCTTTGCCTGATAGACGCCAAAAGAGGCTCGTATTTCA GGTTTGCACAGCCAAAATGAACTTGAGTGATGAGGTAGACCTAGAGGATTAEST: gi|17401263|gb|BM178045.1|BM178045
genomic: AAAATTGAGTTCCCTTTGCCTGATAGACGCCAAAAGAGGCTCGTATTTCAggcaagtctt ... ggtttgatcaGGTTTGCACAGCCAAAATGAACTTGAGTGATGAGGTAGACCTAGAGGATTA
EST: AAAATTGAGTTCCCTTTGCCTGATAGACGCCAAAAGAGGCTCGTATTTCA GGTTTGCACAGCCAAAATGAACTTGAGTGATGAGGTAGACCTAGAGGATTAEST: gi|208106009|gb|GD904222.1|GD904222
genomic: AAAATTGAGTTCCCTTTGCCTGATAGACGCCAAAAGAGGCTCGTATTTCAggcaagtctt ... ggtttgatcaGGTTTGCACAGCCAAAATGAACTTGAGTGATGAGGTAGACCTAGAGGATTA
EST: AAAATTGAGTTCCCTTTGCCTGATAGACGCCAAAAGAGGCTCGTATTTCA GGTTTGCACAGCCAAAATGAACTTGAGTGATGAGGTAGACCTAGAGGATTA
genomic: AAAATTGAGTTCCCTTTGCCTGATAGACGCCAAAAGAGGCTCGTATTTCAggcaagtctt ... ggtttgatcaGGTTTGCACAGCCAAAATGAACTTGAGTGATGAGGTAGACCTAGAGGATTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGCAGACACCTTGGACCCTGCTCTGTTGCGTCCTGGAAGGCTTGATCGTAAAATTGAGTTCCCTTTGCCTGATAGACGCCAAAAGAGGCTCGTATTTCAggcaagtcttttggctattttatttggtttactggacatcttatattctgagtgacaaatttcggtttgttttgaagaccttttcagtgtcttttatgttgaaaaatttaagtagtttattttcagctgattgctaacctattgtttgatggtttgatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG