1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CTATTTGTGTTGCTGCTATCCTTGGTTCCACACTAAATGGAGAGTTTGAAGATGTCAAACGCTTAAATGATCTCCTAATTGAAAAGAACAAAATAACTGGgtgtgtctctttctttctttctttcctctccctctacttaaatgttccttacttttatacaccatccatgccttgattgaatatcttcatttaaatattc...
species | Glycine max |
transcript | GLYMA18G04940.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GATGTCAAACGCTTAAATGATCTCCTAATTGAAAAGAACAAAATAACTGG GTGGGACACTCCTATTCATGTTGATGCAGCCAGCGGTGGGTTCATAGCCCCEST: gi|23733745|gb|BU765081.1|BU765081
genomic: GATGTCAAACGCTTAAATGATCTCCTAATTGAAAAGAACAAAATAACTGGgtgtgtctct ... tgtttggtagGTGGGACACTCCTATTCATGTTGATGCAGCCAGCGGTGGGTTCATAGCCCC
EST: TCTCCTAATTGAAAAGAACAAAATAACTGG GTGGGACACTCCTATTCATGTTGATGCAGCCAGCGGTGGGTTCATAGCCCCEST: gi|14205440|gb|BG839118.1|BG839118
genomic: TCTCCTAATTGAAAAGAACAAAATAACTGGgtgtgtctct ... tgtttggtagGTGGGACACTCCTATTCATGTTGATGCAGCCAGCGGTGGGTTCATAGCCCC
EST: GATGTCAAACGCTTAAATGATCTCCTAATTGAAAAGAACAAAATAACTGG GTGGGACACTCCTATTCATGTTGATGCAGCCAGCGGTGGGTTCATAGCCCCEST: gi|6069700|gb|AW099324.1|AW099324
genomic: GATGTCAAACGCTTAAATGATCTCCTAATTGAAAAGAACAAAATAACTGGgtgtgtctct ... tgtttggtagGTGGGACACTCCTATTCATGTTGATGCAGCCAGCGGTGGGTTCATAGCCCC
EST: GATGTCAAACGCTTAAATGATCTCCTAATTGAAAAGAACANAATAACTGG GTGGGACACTCCTATTCATGTTGATGCAGCCAGCGGTGGEST: gi|17401778|gb|BM178560.1|BM178560
genomic: GATGTCAAACGCTTAAATGATCTCCTAATTGAAAAGAACAAAATAACTGGgtgtgtctct ... tgtttggtagGTGGGACACTCCTATTCATGTTGATGCAGCCAGCGGTGG
EST: GATGTCAAACGCTTAAATGATCTCCTAATTGAAAAGAACAAAATAACTGG GTGGGACACTCCTATTCATGTTGATGCAGCCAGCGGTGGGTTCATAGCCCCEST: gi|209728381|gb|BW652038.1|BW652038
genomic: GATGTCAAACGCTTAAATGATCTCCTAATTGAAAAGAACAAAATAACTGGgtgtgtctct ... tgtttggtagGTGGGACACTCCTATTCATGTTGATGCAGCCAGCGGTGGGTTCATAGCCCC
EST: GATGTCAAACGCTTAAATGATCTCCTAATTGAAAAGAACAAAATAACTGG GTGGGACACTCCTATTCATGTTGATGCAGCCAGCGGTGEST: gi|5677360|gb|AI938490.1|AI938490
genomic: GATGTCAAACGCTTAAATGATCTCCTAATTGAAAAGAACAAAATAACTGGgtgtgtctct ... tgtttggtagGTGGGACACTCCTATTCATGTTGATGCAGCCAGCGGTG
EST: GATGTCAAACGCTTAAATGATCTCCTAATTGAAAAGAACAAAATAACTGG GTGGGACACTCCTATTCATGTTGATGCAGCCAGCGGTGGGTTCATAGCCCC
genomic: GATGTCAAACGCTTAAATGATCTCCTAATTGAAAAGAACAAAATAACTGGgtgtgtctct ... tgtttggtagGTGGGACACTCCTATTCATGTTGATGCAGCCAGCGGTGGGTTCATAGCCCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTATTTGTGTTGCTGCTATCCTTGGTTCCACACTAAATGGAGAGTTTGAAGATGTCAAACGCTTAAATGATCTCCTAATTGAAAAGAACAAAATAACTGGgtgtgtctctttctttctttctttcctctccctctacttaaatgttccttacttttatacaccatccatgccttgattgaatatcttcatttaaatattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccctc