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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGTAAATACTAATGCTGATTTCAGATCCGGATATATTATGAATACTAGCATTGCTGGTCTTGAAAAAGCGGATGCCTTCCTGTTGGTTGGTACCCAGGtatatctcattatctctctaatgtattttaataatgtctgttttttaatgttacagatggtcaaatgattcctgtgttagactaaataatttttcttaag...

Basic information

species Glycine max
transcript GLYMA18G04730.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G04730.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os03g50540.1 (Oryza sativa), 5'ss of exon 4
-GGTGTAAATACTAATGCTGATTTCAGATCCGGATATATTATGAATACTAGCATTGCTGGTCTTGAAAAAGCGGATGCCTTCCTGTTGGTTGGTACCCAGGtata-tctcat---tatctctctaatgtattttaat-aatgtctgttttt--taatgttacagatggtcaaatgattcctgtgttagactaaataatttttcttaag
 |||  || | ||  ||| ||| |  | ||    ||  | |||||||||||||||||||| ||||| ||||| |||| |||||| ||||||||||| |||||| | |||      || ||  |   ||  | ||| | | || |  |||||  | |  |      |  || ||  | | ||||||   | |  ||    |        
TGGTCCAAGTCCTCCTGCGGATCTACGTTCTAACTACCTAATGAATACTAGCATTGCTGGGCTTGAGAAAGCTGATGTCTTCCTTTTGGTTGGTACACAGgtaaaatcttgactataccttacctgtggctattatttactgccaatttttcttgaattcttcacttctccaagaaatgctgtgt--aattgcattgcctca------

upper sequence: GLYMA18G04730.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G145854_T01 (Zea mays), 5'ss of exon 4
-GGTGTAAATACTAATGCTGATTTCAGATCCGGATATATTATGAATACTAGCATTGCTGGTCTTGAAAAAGCGGATGCCTTCCTGTTGGTTGGTACCCAGGtatatctcat-tatctctctaatgtattttaataatgtctgtttttta-atgttacagatggtcaaatgattcctgtgttagactaaataatttttcttaag
 |||   ||| ||   || ||| |  ||||    ||  | |||||||| ||||||||||| |||||||| || |||| |||||| |||||||| || |||||| |  |||| | | |  ||| ||    ||  |  |   || || ||  ||  |    ||   | | |   |  | |  |  |||  ||  | |    |  |
TGGTCCTAATCCTCCAGCAGATCTGCGATCTAACTACCTAATGAATACGAGCATTGCTGGGCTTGAAAAGGCTGATGTCTTCCTTTTGGTTGGCACTCAGgtaaaattcatctctgtgcctagtgccactttct--ttcttgcttcttgcattatctgaatataccattatattgtataatc-actggatcttgtgctgttgg

upper sequence: GLYMA18G04730.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G126038_T01 (Zea mays), 5'ss of exon 4
-GGTGTAAATACTAATGCTGATTTCAGATCCGGATATATTATGAATACTAGCATTGCTGGTCTTGAAAAAGCGGATGCCTTCCTGTTGGTTGGTACCCAGGtatatctcattatctctctaatgtattttaataatgtctgttttttaatgttacagatggtcaaatg-attcctgtgt-tagactaaataatttttcttaag----
 |||   ||| ||   || ||  |  ||||    ||  | |||||||| ||||||||||| |||||||| || ||||  ||||| |||||||| || |||||| ||  |      ||   ||||  |  |   | | |||   ||   |  || ||     | ||||  |    | | | ||  |   |||  || |  |       
TGGTCCCAATCCTCCAGCAGACCTGCGATCTAACTACCTAATGAATACCAGCATTGCTGGGCTTGAAAAGGCTGATGTGTTCCTTTTGGTTGGCACTCAGgtaaattac------tcctcaatgcctagtgccattttcttggttgctac-ttgcattctctgaaatataccattatatataatcactatatcttgtgctggtggca