Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGCGTTCATGCAACACGTCCTAGTAATTCCAATTCACTCACTTTTCTCGTGACAggtattaatgttctcatattatgcttgttttaaccacattttgtgaatgtgttttttccttcctttatattgcatcaaggtcccatttacgccttactgcttatatgtttca

Basic information

species Glycine max
transcript GLYMA18G04160.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15202365|gb|BI425363.1|BI425363
EST:     TTCATGCAACACGTCCTAGTAATTCCAATTCACTCACTTTTCTCGTGACA                         GTTCTTCTGTTATTCATGATA
genomic: TTCATGCAACACGTCCTAGTAATTCCAATTCACTCACTTTTCTCGTGACAggtattaatg ... atatgtttcaGTTCTTCTGTTATTCATGATA
EST: gi|6481566|gb|AW200837.1|AW200837
EST:     TCATGCAACACGTCCTAGTAATTCCAATTTCACTCACTTTTCTCGTGACA                         GTTCTTCTGTTATTCATGATACTGAACTCTCACCAGATGTCCCCAAACTTT
genomic: TCATGCAACACGTCCTAGTAATTCCAATT-CACTCACTTTTCTCGTGACAggtattaatg ... atatgtttcaGTTCTTCTGTTATTCATGATACTGAACTCTCACCAGATGTCCCCAAACTTT
EST: gi|21255789|gb|BQ452677.1|BQ452677
EST:     TTCATGCAACACGTCCTAGTAATTCCAATTCACTCACTTTTCTCGTGACA                         GTTCTTCTGTTATTCATGATACTGAACTCTCACCAGATGTCCCCAAACTTT
genomic: TTCATGCAACACGTCCTAGTAATTCCAATTCACTCACTTTTCTCGTGACAggtattaatg ... atatgtttcaGTTCTTCTGTTATTCATGATACTGAACTCTCACCAGATGTCCCCAAACTTT
EST: gi|58016501|gb|CX703243.1|CX703243
EST:     TTCATGCAACACGTCCTAGTAATTCCAATTCACTCACTTTTCTCGTGACA                         GTTCTTCTGTTATTCATGATACTG-ACTTCTCACCAGATGTCCCCAAACTT
genomic: TTCATGCAACACGTCCTAGTAATTCCAATTCACTCACTTTTCTCGTGACAggtattaatg ... atatgtttcaGTTCTTCTGTTATTCATGATACTGAAC-TCTCACCAGATGTCCCCAAACTT