Sequence
atgc intronic sequence ATGC exonic sequenceGCTTCTTGAAGTTAATAGGATGCTAAGAGCAGGAGGGTACTTTGTCTGGGCTGCCCAGCCAGTTTATAAGCATGAAGAAGTTTTAGAAGAACAATGGGAAggtataattaaactttttgaaccctttttagctatggagttagtgtatttaaggatagatctattttgtaccttcatgtattaaatattaatactagcat...
Basic information
species | Glycine max |
transcript | GLYMA18G03890.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA18G03890.2 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os01g62800.1 (Oryza sativa), 5'ss of exon 4
GCTTCTTGAAGTTAATAGGATGCTAAGAGCAGGAGGGTACTTTGTCTGGGCTGCCCAGCCAGTTTATAAGCATGAAGAAGTTTTAGAAGAACAATGGGAAggtata-attaaactttttgaaccctttttagctatggagttagtgtattt-aaggatagatctattttgtaccttcatgtattaaatattaatactagcat
||||| || |||||||| ||||| ||||| || || || |||| ||||| || ||||| ||||||||||||||||| | | ||||| |||| ||||||| |||| | || |||| | || | | | | ||| || | | | ||| | ||| | || | | | | |
-CTTCTGGAGGTTAATAGAATGCTCAGAGCCGGCGGTTATTTTGCTTGGGCAGCACAGCCTGTTTATAAGCATGAAGAGGCTCAGCAAGAAGCATGGAAAGgtatgcattatttcctatgtacccctagtaatttttgttccattgtgggggaaacacactagtctttcatttattctgttggtattttcccacatgacga-
upper sequence: GLYMA18G03890.2 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G092120_T01 (Zea mays), 5'ss of exon 4
GCTTCTTGAAGTTAATAGGATGCTAAGAGCAGGAGGGTACTTTGTCTGGGCTGCCCAGCCAGTTTATAAGCATGAAGAAGTTTTAGAAGAACAATGGGAAggtata----attaaactttttgaaccctttttagctatggagttagtgtatttaagg-atagatctattttgtaccttcatg-tattaaatattaatactagcat
|| || || |||||||| |||| ||||| ||||| ||||||| ||||| ||||| || ||||||||||||||||| | | |||| |||| ||||||| | | | | ||| ||| | | | | | || | || | || || ||| ||| | | | || | ||| | |
-CTCCTGGAGGTTAATAGATTGCTTAGAGCTGGAGGCTACTTTGCTTGGGCAGCCCAACCTGTTTATAAGCATGAAGAGGCCCAACAAGAGGCATGGAAAGgtatgttctacttattctgttgtaccttctcttttgttagtgtgataacatacagctcatgtatgagtttggtagttctttaatgctagagatttgtcat-----
upper sequence: GLYMA18G03890.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv13s0019g02250.t01 (Vitis vinifera), 5'ss of exon 4
GCTTCTTGAAGTTAATAGGATGCTAAGAGCAGGAGGGTACTTTGTCTGGGCTGCCCAGCCAGTTTATAAGCATGAAGAAGTTTTAGAAGAACAATGGGAAggtataattaaactttttgaacccttttt--agctatggagttagtgtatt--taagga--tagatctattttgtaccttcatgta--ttaaatattaatactagcat
|| ||||| || ||||| ||||| | |||||||| ||||||| ||||| || |||||||||||||||||||||||| |||||||||| ||| ||||||| ||| || | | || ||| || | || | || | | || || || || ||||| | | | |||| || | ||
-CTGCTTGAGGTAAATAGAATGCTTCGGGCAGGAGGATACTTTGCTTGGGCAGCACAGCCAGTTTATAAGCATGAAGAAAACCTAGAAGAACAGTGGAAAGgtatcatt----ttctgggactcttattcaaaataagctattgatatcttatcaaagaagtaagcctattgaaaagttatggtcactttaattacctttttgag---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193511024|gb|FK468937.1|FK468937EST: CTGCCCAGCCAGTTTATGAGCATGAAGAAGTTTTAGAAGAACAATGGGAA GAGATGCTTAATCTTACCACTCGTCTCTGCTGG
genomic: CTGCCCAGCCAGTTTATAAGCATGAAGAAGTTTTAGAAGAACAATGGGAAggtataatta ... gttatctccaGAGATGCTTAATCTTACCACTCGTCTCTGCTGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCTTCTTGAAGTTAATAGGATGCTAAGAGCAGGAGGGTACTTTGTCTGGGCTGCCCAGCCAGTTTATAAGCATGAAGAAGTTTTAGAAGAACAATGGGAAggtataattaaactttttgaaccctttttagctatggagttagtgtatttaaggatagatctattttgtaccttcatgtattaaatattaatactagcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC